| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0286 |
|---|
| Symbol | |
|---|
| ID | 4250832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 305325 |
|---|
| End bp | 307496 |
|---|
| Gene Length | 2172 bp |
|---|
| Protein Length | 723 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638116841 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_732423 |
|---|
| Protein GI | 113968630 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000335146 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000000154672 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTCA AAACCTCGTT TGTTGCCCTC GCCGTATTTG CCGCCCTCAC CCAATCCGCA
GTGGCTCAAG AAGCCCCAGA TACGGGAACG AATAAGAATA AAGACATCGA AAAGATCACT
GTCACCGCGA GCCGCATGGA TAAATCGCCA AGCTCCATTC CCAATACAGT GACCATTATC
GACCGCGTGC AACTCGAAGA GCAGTTCCGC ACCACTAAAG ATTTGTCGAC TATTATCGGT
AACTTAGCAC CTAGCTTTTC ACCCAGCCGT CAGAAGATGA GCAACACGGG CGAAACCCTG
CGTGGCCGCC CGCCATTAAT CATGATCGAT GGAGTGCCCC AATCCAACCC GCTGCGTAGT
GGTGGTCGTT CGGGACAAAC TATCGACCCT GCGATGATCG AGCGTATCGA AATTATCCAC
GGTGCCAATG CGATGCACGG CTTAGGCGCA CAGGGCGGTA TCATCAACTA CATCACCAAA
AAACCAACGG GCGATAACCA ACACGTCGTC AGTTTCGATG TTACTGTGCC CGACTCGCTC
AAATCGAACG GTGTAAGTTT TGGTGCAAGC TATGCGTTTT CGGGCGAATC CGAGCTGATC
GATATGTTGG GCTCGGTGAG CTACCGTAAT AACGGCGTGT ACTACGATGC AAACCACGAT
GTGATTGGGG TGGACACGAC GCAAGGCGAG TCCATGGACA GCCAGAGCAA AGACTTCTTT
ATCAAACTCG GCCACAATTT TGCCGAGTCG CGCTTAGAGC TGATGGTTAA CCATTACAAC
ATGGAGAACA ACGGCGATTG GATGCCAGTG AAAGGCGATA TAACCACTGG CAAACCAACG
GGCGCAATCG AAGAAAAACA ACCTTGGGAA GCGGCTAACA ACCAAGTCAC GACGACTAGC
CTCACTTACA CCCACGAGAA TATTGCAGGT CAACAGCTGA GTATTCAGTT GTTTAATCAA
GATTTTGAGG CCGTGTATGG CGGTGGCTGT AACAAGACTT TCTACGATCC TGCATTTGCC
AATAACGACA ACCTAGTACA ATGCGAAGGC CCTAAAGGCG AGAGTTGGTA CTATGAGCAA
TCGCGTAACT CTTCGGTCAA ATGGGGATTA AAGACCTCGT TAATTGCCAA AAATATTGCC
GATACGGGTA TCGACGCCGC CTATGGTATC GACCTGTTCC GCGATACCAC AGAGCAGGAT
TTAGTACAGA CGGGTCTGTC GTGGGTGCCT GAAAGCACCT ATGACAACTT CGCGCCCTAT
TTGCAGTTAG ATTATGATTT AATTACCGAT CTAACCCTAT CGACCGGCGT ACGCTACGAG
CACGCTAAGC TCAATGTCGA TGACTACAAG ACACTCTACG GCGCGGGAAA TAAACAAATT
GAAGGGGGCG AAGCGAGTTT CGACGAGACC CTATTCAACA TAGGTATCTC CTACAAAATC
ACTCCAGATA TCCGCGTTTA CACTAGTTAT AACCAAGGTT TTGGTATGCC AGATATCGGC
CGCATTCTGC GCGACGGTAA CAGCTTCCCT GGCGCCAATC CTAGCATTAG CGACTCTCTA
TCCCTTGCAC CGATTGTGAC GGATAACGTG GAGTTTGGCG CCGATTATCA AGGAGAATAC
TTAAGCGCTA AGATTGCCTA CTATCGTTCG GCAACGGATT ACGGTGCGCG TTTAGCCTTA
AACAGCGACG GCTTCTACGA TGTCAAACGT GAGAAGAGCG TGATCGATGG TATCGAAGCC
AATATCACCG CCTACCTGAC CAGCAACGAC GATCTGGGCA TGAATTTAGC GATTCAGCGC
GGTGAATATG ATTCGAATGA TGACAACAAC ACAGATACCG ATCTCGATGG TGCCAACATT
TCACCGAATC GTATCAACCT GTTCTGGACC CATAATTTCG ATAACGAGAT GTCGACGCGC
GTACAGGCAA ACTACTTTAT GGACCGTGAT TTCGAAGATG CCACAGGCGA GAAATATGCC
GAGTTTAATG GCTACACCAC TGTCGATGCG TCATTCTCAA TGCCGCTCTA CACTGGCACC
TTAACCTTAG GCGTGCAAAA CCTGTTTAAT AAGGATTATT TCAACTACTA CTCACAAACT
ATGGGTACCA ATGATCGTTA TTTCAAAGGC ATGGGTCGTA CCGCTACTAT CGGCTATACA
GTCGCATTTT AA
|
|---|
| Protein sequence | MTFKTSFVAL AVFAALTQSA VAQEAPDTGT NKNKDIEKIT VTASRMDKSP SSIPNTVTII
DRVQLEEQFR TTKDLSTIIG NLAPSFSPSR QKMSNTGETL RGRPPLIMID GVPQSNPLRS
GGRSGQTIDP AMIERIEIIH GANAMHGLGA QGGIINYITK KPTGDNQHVV SFDVTVPDSL
KSNGVSFGAS YAFSGESELI DMLGSVSYRN NGVYYDANHD VIGVDTTQGE SMDSQSKDFF
IKLGHNFAES RLELMVNHYN MENNGDWMPV KGDITTGKPT GAIEEKQPWE AANNQVTTTS
LTYTHENIAG QQLSIQLFNQ DFEAVYGGGC NKTFYDPAFA NNDNLVQCEG PKGESWYYEQ
SRNSSVKWGL KTSLIAKNIA DTGIDAAYGI DLFRDTTEQD LVQTGLSWVP ESTYDNFAPY
LQLDYDLITD LTLSTGVRYE HAKLNVDDYK TLYGAGNKQI EGGEASFDET LFNIGISYKI
TPDIRVYTSY NQGFGMPDIG RILRDGNSFP GANPSISDSL SLAPIVTDNV EFGADYQGEY
LSAKIAYYRS ATDYGARLAL NSDGFYDVKR EKSVIDGIEA NITAYLTSND DLGMNLAIQR
GEYDSNDDNN TDTDLDGANI SPNRINLFWT HNFDNEMSTR VQANYFMDRD FEDATGEKYA
EFNGYTTVDA SFSMPLYTGT LTLGVQNLFN KDYFNYYSQT MGTNDRYFKG MGRTATIGYT
VAF
|
|---|
| |