| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0279 |
|---|
| Symbol | |
|---|
| ID | 4251175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 298781 |
|---|
| End bp | 299884 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638116834 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_732416 |
|---|
| Protein GI | 113968623 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000167644 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCGCAAA TCATCGCTGA TCTGCACTGC CAGATCCAAA ACCATAAACA CATAAAACTG
AGCGCCGAAT TTAGCTGCAA GGCGGGTGAG GTGCTGGCTG TCGTCGGGCC TTCTGGCGGC
GGTAAGACAA CGCTACTGCG GATGATCGCA GGACTAAATC ATCCCGATGC GGGCAGAATT
GTGTTTGGTG AGACGCCATG GTTCGACAAC AAGAGTCGCA CCGCGCTAAC GCCGCAGCAG
CGTCATATCG GCTATATGCC ACAGCATTTT GGGCTATTTC CTAATCTTAC CACGCTCGAA
AACGTCGTAG CCGGACTCGA CCATATTCCC AAATCGGAGC GAATAGCCAG AGCGAAGGAC
TGGTTAGAGC GGGTCAATCT CCATGGGCTG CCCGATAGGC TGCCTATGCA TCTCTCTGGT
GGTCAGCGTC AACGGGTTGC GCTTGCCCGA GCCCTTGCCC GTGAACCGTC GGTGTTGTTG
CTCGATGAGC CATTCTCGGC GGTGGACAGA GAAACCCGCG AACGTTTATA CCTCGAGCTT
GCCCGCCTAA AAGAGCAGCT GCTTTGCCCC GTGATTATGG TGACCCACGA TTTAAATGAA
GCGCTGTTGC TGGCCGATTC GATGATCTTG ATTAGCCAAG GTCAGATGTT GCAGCAGGGC
GCGCCGTTTG AGGTGTTATC GCGGCCACGT AACGAGGCCG TTGCGCGGCA GATGGGGATA
AGGAATATTT TCGATGGCGA AGTGGTGTTT CAAGACCGCA CTAAGGACAT CACTTGGCTG
AAGTTTGGCG AGCAACTGAT TGCCAGTGAT TTTGGTAAAG ACCGCAGCGT GGGCAGTAAA
GTGCGTTGGG TGATCGCCAA TCAAGGTATT CGATTTAACG CTATCACGAA TGGGCGTTTA
TGCCGTAGTT TTAATAAGTT AGATATCACC ATCGACTCCT TACTGGTGAT GGGCGAGTCG
GTGCGCGTCG TCTGTTATGT CACGGGGACT AAGCTACAGC TTAATACGGA AGTGTCGCTC
CACCTCGTGC AAAAGCTTGG CTTAATCAAG GGCATGCAAA CCACGGTTGC GCTCAAGTCT
GAGCAAATTC ATATTTTAGA ATAG
|
|---|
| Protein sequence | MAQIIADLHC QIQNHKHIKL SAEFSCKAGE VLAVVGPSGG GKTTLLRMIA GLNHPDAGRI
VFGETPWFDN KSRTALTPQQ RHIGYMPQHF GLFPNLTTLE NVVAGLDHIP KSERIARAKD
WLERVNLHGL PDRLPMHLSG GQRQRVALAR ALAREPSVLL LDEPFSAVDR ETRERLYLEL
ARLKEQLLCP VIMVTHDLNE ALLLADSMIL ISQGQMLQQG APFEVLSRPR NEAVARQMGI
RNIFDGEVVF QDRTKDITWL KFGEQLIASD FGKDRSVGSK VRWVIANQGI RFNAITNGRL
CRSFNKLDIT IDSLLVMGES VRVVCYVTGT KLQLNTEVSL HLVQKLGLIK GMQTTVALKS
EQIHILE
|
|---|
| |