| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0268 |
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| Symbol | |
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| ID | 4251164 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 287979 |
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| End bp | 289436 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638116823 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_732405 |
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| Protein GI | 113968612 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.624982 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000186113 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGCAATC ACGTTTGGAA TGATAAAAAG AAGTTTATTT GGTTGTTGTC AGTGCTGTTG
CTGGTGGCCT TTTTAGTCAC CAGTGGGATC AGTTACAAAG TCGCCCATGA CTCCTTGAGC
CAGCAGATTG AGAGCAATAC GTTACCCTTA ACCAGCGACA ATATTTATTC TGAAATTCAG
CAGGATCTGC TTCGCCCTAT CTTTATCTCC TCGCTTATGG CACAGGATAC CTTTGTGCGT
GATTGGATGC TAAACCATGA AGAGGAGCCT GAAAAACTGA TCCGTTATCT CAAAGAAATC
CAAGATAAAT ACGATACAGT CACCAGCTTT TTTGTCTCGG AGCAGAGCCG TAATTATTAC
CACTCATCGG GAGTGCTCAA GCAGATCCAA GATGTCGACC CAAACGATGC CTGGTATTTC
CGCGTTCGCT CTTTGCCCGA ATCAGAACAT TACGAAATAA ATATCGATGC CGATACCGCG
GATCGGACCA AAACAACCGT ATTTGTTAAC TACAAAGTTT TCGATTTTGA CGGTAAGTTT
ATTGGCGTCA CTGGTGTTGG CCTTGCGGTT GAAAAGGTTA AGGCACTGAT CGAACTCTAT
CAGAAACGTT ACAATCGCCG GGTATTTTTC ACCGATAGGC AGGGTAATGT CACCCTCCAT
GGCGATGAGT ATGACGGTGC TGATTCATTA CAGACTAGCG CCGGACTCGA GCAGCTTGCC
ACGCGGATTC TGACTAGCCC GAGCGCGGCC TTTAGCTATC AGCGAAACGG TAAAACTGCC
TATCTAAACA GCCGCTTAGT ACCCGAGTTC AAGTGGTATC TTATCGTTGA GCAGGAAGAT
GCGCCGCAGG AGCAAGAACT GCTGAATACC TTTTGGAGTA ACTTAGGTTT AAGTTTGCTG
GTAACGATTG GGATTTTGCT GATTTCAAAC ATGACCTTAG GCCGTTATCA GCGCAAGCTT
GAGATCATGG CCTCAACCGA CAAACTGACC GGCGCCGCGA ATCGCCAAGT ATTTGAAGAA
TATTTCCATC AGGCATTAGA CAAAGCAAAA CTATCGCGGA CACCCATTTC AATTCTGCTT
ATTGATATAG ACCACTTTAA AAAAGTGAAT GATAGCTATG GCCATAGCGT CGGTGACTTA
GTGCTCAAAA CCGTCACCAA CCTACTGCGT AGTCAATTAA AAGAGCAGGA CATACTTTGC
CGTTGGGGCG GTGAGGAATT TATCGTGTTA TTGCCAGAGA TGGATCTTAG CCATGCTGCT
GAATTAGCGA AGCATTTCCG AGATTTAATT TTCCAGCGCG AGTTAAAAGT GAATGGCGTG
CACATAGCAA TAACAGTGAG TATTGGGGTA GCCGAATACC AAAAACTCGA GCCTGCTGAA
GATTTGATCA AGCGAGCGGA TCTCGCCCTG TATCAGGCGA AAGAATCGGG GCGTAATCAG
GTGGTTCTCA ATCAGTAA
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| Protein sequence | MGNHVWNDKK KFIWLLSVLL LVAFLVTSGI SYKVAHDSLS QQIESNTLPL TSDNIYSEIQ
QDLLRPIFIS SLMAQDTFVR DWMLNHEEEP EKLIRYLKEI QDKYDTVTSF FVSEQSRNYY
HSSGVLKQIQ DVDPNDAWYF RVRSLPESEH YEINIDADTA DRTKTTVFVN YKVFDFDGKF
IGVTGVGLAV EKVKALIELY QKRYNRRVFF TDRQGNVTLH GDEYDGADSL QTSAGLEQLA
TRILTSPSAA FSYQRNGKTA YLNSRLVPEF KWYLIVEQED APQEQELLNT FWSNLGLSLL
VTIGILLISN MTLGRYQRKL EIMASTDKLT GAANRQVFEE YFHQALDKAK LSRTPISILL
IDIDHFKKVN DSYGHSVGDL VLKTVTNLLR SQLKEQDILC RWGGEEFIVL LPEMDLSHAA
ELAKHFRDLI FQRELKVNGV HIAITVSIGV AEYQKLEPAE DLIKRADLAL YQAKESGRNQ
VVLNQ
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