Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0261 |
Symbol | |
ID | 4250825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 279996 |
End bp | 280592 |
Gene Length | 597 bp |
Protein Length | 198 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638116817 |
Product | TetR family transcriptional regulator |
Protein accession | YP_732399 |
Protein GI | 113968606 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.00036521 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAACAG AAACCCAATC TACTCGTCAG CATATTCTCG ACGTCGGTTA CTCACTGATC GTTAAGCAAG GCTTTTCGTG CCTAGGGTTA GCCCAACTAC TCAAGGCCGC CCAAGTACCG AAAGGCTCGT TTTACCATTA CTTTAAATCT AAAGAACAAT TCGGCGAGGC GCTGTTAACG GGTTATTTTG AGCAATACCA AGCAGAGCTT GATAGCTTAT TTGCCAACCC ACAACTCTCC GGCTTTGAGC GCCAAATGCA ATACTGGCAA AGATGGCTGC ATGTACAGCA AGATGGTTGT GTCGATCAAA AATGCTTAGT CGTTAAATTA AGTGCCGAGG TTGCCGACCT CTCAGAAGCA ATGCGCCTTG TACTTTTAAA AGGTTCTGCA GGCATCATTG AACGCTTAAC TCATTGCATT CAAACAGGGA TTGCGGATAA CTCCATCTGC GAACAGGATG CTCAAGCAAC GGCAGAATTG TTGTATCACA TGTGGATCGG CGCCAGCCTG ATGAATAAAC TTGGCCACAG TCGAGCAGCC TTAGAGCGCG CCCTAGTCAC GACCGAAGCC ATTTTAAAGA CCAAAACTGT GCGTTAA
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Protein sequence | MKTETQSTRQ HILDVGYSLI VKQGFSCLGL AQLLKAAQVP KGSFYHYFKS KEQFGEALLT GYFEQYQAEL DSLFANPQLS GFERQMQYWQ RWLHVQQDGC VDQKCLVVKL SAEVADLSEA MRLVLLKGSA GIIERLTHCI QTGIADNSIC EQDAQATAEL LYHMWIGASL MNKLGHSRAA LERALVTTEA ILKTKTVR
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