| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0250 |
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| Symbol | |
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| ID | 4250814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 268246 |
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| End bp | 270105 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638116806 |
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| Product | Fis family GAF modulated sigma54 specific transcriptional regulator |
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| Protein accession | YP_732388 |
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| Protein GI | 113968595 |
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| COG category | [K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000206516 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACAGTAA AACCGCATTT TCCAACCACA CAGGCATGGT TAGCCGATTC ATGGCAACGC
AGCTTAGGTG CTGGCTTATC AGAGTTTCGT GCTGGTGAGG ATCTCAGACT CACGCGCGCG
GAGCTCAAAC ATAAACATGA GAAATATCAG CAGCTCATCG AATTAGTACA ATCCCATGCC
TTGCCGCTGT TTAATCAACT GATGGCGCAC TCCAATAGTC GATTATTGCT CTCCGATGCC
GACGGTTATG TGCTGAAACA TTGGGGGGTG AGCCGCTATT CCAGCAAGCT GGCGGATGTG
GCGCTCGATA TTGGGGTCAA CTGGCTCGAA AAGTATAAGG GCACTAATGC AATAGGCACG
GCGCTCACGG CCAAACAGGC GGTATCAGTG GTTGGCGAGC AGCATTTTAT CCGCCAAAAC
CGTTTTATGA GTTGCACCGC TTGCCCGATT TTTTCGCCCC AAGGCGAGAT GCTCGGAGTG
CTCGATATTA CCAGTGAGCA GCAGCGGCAT TCGCAGCAAA CCTTGATGCT AGTGTCGAGT
TTGGCGCAGC AGGTCGAAAC GGCGCTGCTG TGTCATCTGC CCGGTAGTCA TTATCGAATC
GATTTCGCGG CGCAGCCGAG TCTATTAAAT TCAGGTTGGC AAGGTATAGT CATCGCCAGC
AGTGACGGGC GAATTGTGGG CTGTAATCCC ATGGCTAAAC AACTGCTGAG CCAAGCAAAG
TTGGGGGACA GTTTAGAGCA ACACCTCGGC GACAATTGGG CGCGAGCGGG GGGCTTTCAC
CGCGATTCGG CGCTGCATGT GCAGACGCAA GCACTCGCAC TGACACAGAC GAAAAGTACT
AGAACCCTTC AAGACAAACC CTCGAACCAA TTGGGGGTCA GGTTTCGCGA CCCGCTATTG
GAGCGGGCCT GGCAGCAAGC GAATAAGGTG ATTACTAAGC AGATCCCCCT ACTGGTGCTT
GGCGAAACGG GTGTCGGCAA GGAGCAATTT GTGAAAAAGC TCCACGCCCA GAGTGCCCGC
CGCGCGCAGC CCTTGGTGGC GGTAAACTGC GCCGCCTTGC CTGCTGAGTT AGTTGAGTCT
GAGTTATTTG GTTATCAGGC GGGGGCTTTT ACTGGCGCTA ATAGAACCGG TTTTATCGGT
AAGATCCGCC AAGCCCACGG TGGCTTTTTG TTCCTCGATG AAATTGGTGA GATGCCGCTG
GCGGCGCAGA GTCGTTTACT CCGCGTGTTG CAGGAGCGTG AGGTCGTTCC CGTCGGCAGT
AATCAAAGTT TTAAGGTCGA TATTCAGATC ATCGCCGCGA CCCATATGGA TTTAGAGTCG
CTGGTGGCAC AGGGATTGTT CCGTCAGGAC TTGTTTTATC GCCTAAATGG ATTGCAAGTG
CGGCTTCCTG CACTGCGTGA ACGGCAGGAT ATTGAGCGCA TCATCCATAA ATTGCACCGC
CGTCACCGCA GTAGCGCGCA AACCTTGTGT ACTGAGTTGT TGGCGCAGCT AATGCGTTAC
GATTGGCCCG GCAACCTAAG GGAGCTGGAT AACCTAATGC AGGTGGCGTG TTTGATGGCT
GAAGGTGAGG CCGTACTCGA GATAAATCAT CTCCCCGATT ACCTTGCTCA AAAGCTCATG
AATCTGGCGT TTGAGCCCCA AACTTTAACT GAAGTTGTCG ACGCCGAAAC CACGGCGCAT
CCGCACGAAC TGTCCGAGTC TAGCTCTACG ACTATAGACT CGCTCCACGG AACCATAAAT
CTGAACGTGT TACAGGCTTA TCGTGCCTGC GAGGGCAATG TGAGTCAGTG CGCTAAGCGT
TTAGGGATCA GCCGTAATGC CTTGTATCGC AAGTTAAAAC AGCTAGGGGT TAAGGACTAA
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| Protein sequence | MTVKPHFPTT QAWLADSWQR SLGAGLSEFR AGEDLRLTRA ELKHKHEKYQ QLIELVQSHA
LPLFNQLMAH SNSRLLLSDA DGYVLKHWGV SRYSSKLADV ALDIGVNWLE KYKGTNAIGT
ALTAKQAVSV VGEQHFIRQN RFMSCTACPI FSPQGEMLGV LDITSEQQRH SQQTLMLVSS
LAQQVETALL CHLPGSHYRI DFAAQPSLLN SGWQGIVIAS SDGRIVGCNP MAKQLLSQAK
LGDSLEQHLG DNWARAGGFH RDSALHVQTQ ALALTQTKST RTLQDKPSNQ LGVRFRDPLL
ERAWQQANKV ITKQIPLLVL GETGVGKEQF VKKLHAQSAR RAQPLVAVNC AALPAELVES
ELFGYQAGAF TGANRTGFIG KIRQAHGGFL FLDEIGEMPL AAQSRLLRVL QEREVVPVGS
NQSFKVDIQI IAATHMDLES LVAQGLFRQD LFYRLNGLQV RLPALRERQD IERIIHKLHR
RHRSSAQTLC TELLAQLMRY DWPGNLRELD NLMQVACLMA EGEAVLEINH LPDYLAQKLM
NLAFEPQTLT EVVDAETTAH PHELSESSST TIDSLHGTIN LNVLQAYRAC EGNVSQCAKR
LGISRNALYR KLKQLGVKD
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