Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0217 |
Symbol | rpmD |
ID | 4250675 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 237930 |
End bp | 238112 |
Gene Length | 183 bp |
Protein Length | 60 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638116769 |
Product | 50S ribosomal protein L30 |
Protein accession | YP_732355 |
Protein GI | 113968562 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1841] Ribosomal protein L30/L7E |
TIGRFAM ID | [TIGR01308] ribosomal protein L30, bacterial/organelle |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.000105847 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.0000000000126926 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | ATGGCTACTA AAACTGTAAA AGTTACTCAG ACTAAAAGTG CTATCGGTCG TTTACCAAAG CACCGCGCGA CCTTAACAGG TCTTGGTCTG CGTCGCATTG GTCACACTGT TGAATTAGAA GATACTCCTT CTGTTCGCGG TATGATCAAC AAGGTCTACT ACATGGTTAA GGTGGAGGAT TAA
|
Protein sequence | MATKTVKVTQ TKSAIGRLPK HRATLTGLGL RRIGHTVELE DTPSVRGMIN KVYYMVKVED
|
| |