| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0193 |
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| Symbol | |
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| ID | 4250738 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 220305 |
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| End bp | 224522 |
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| Gene Length | 4218 bp |
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| Protein Length | 1405 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638116745 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_732331 |
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| Protein GI | 113968538 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.508945 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000984081 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAAAGACT TATTAAAGTT TCTGAAACAG CAAAGCAAGA CTGAAGAATT TAACGGCATC
AAAATTGGTC TGGCATCGCC TGATCTGATC CGTTCTTGGT CTTTTGGTGA AGTTAAGAAG
CCAGAAACCA TTAACTACCG TACCTTCAAG CCTGAGCGTG AAGGTCTGTT CTGTGCGCGT
ATCTTTGGCC CGGTCAAAGA TTACGAATGT TTGTGCGGTA AGTACAAGCG TTTGAAGCAC
CGTGGTGTGA TCTGTGAAAA GTGTGGCGTA GAAGTTACCC AGACTAAAGT ACGTCGTGAG
CGTATGGGTC ACATTGAACT GGCTAGCCCA GTTGCCCACA TTTGGTTCTT GAAATCACTG
CCGTCCCGTA TCGGTTTAAT GCTGGACATG ACGCTGCGTG ATATCGAACG CGTACTGTAT
TTTGAATCTT TCGTCGTGAT CGAGCCTGGC ATGACCAGCC TTGAACGTGG CCAAATGCTG
ACAGAAGAAA ACTATCTGGA CGCATTAGAA GAATACGGTG ACGAATTCGA AGCTAAGATG
GGTGCTGAAG CGGTATTAGA ACTGCTGCGC GCGATCGATC TCGAAAAAGA AATCGAACAA
ATGCGTGAAG AGCTGCCATC AATCAACTCT GAGACTCGTC GCAAGAAAGT GACCAAGCGT
CTTAAGTTGA TGGAAGCGTT CCACACTTCT GGCAACAAGC CAGAGTGGAT GATCTTAAAA
GTACTGCCTG TGTTACCACC TGACTTACGT CCGCTGGTAC CGCTCGATGG CGGCCGCTTC
GCGACTTCAG ATCTGAACGA TTTGTACCGC CGCGTGATCA ACCGTAACAA CCGTTTGAAG
CGTCTGTTAG ATTTAGCTGC GCCGGACATC ATCGTACGCA ACGAAAAGCG TATGTTACAA
GAGTCTGTTG ATGCGCTATT AGATAACGGT CGTCGTGGTC GTGCTATTAC CGGTTCTAAC
AAACGTCCTC TGAAATCTTT GGCCGATATG ATCAAAGGTA AACAAGGTCG TTTCCGTCAG
AACTTATTAG GTAAGCGTGT TGACTACTCT GGTCGTTCGG TAATTACCGT AGGTCCTACT
TTACGTCTGC ACCAATGTGG TCTTCCTAAG AAGATGGCAC TGGAACTGTT CAAGCCATTC
ATCTATGGCA AGCTGGAAGG TCGTGGCTTA GCGACAACCA TCAAAGCTGC TAAGAAGATG
GTCGAGCGTG AAGTGGCGGA AGTTTGGGAC GTTCTGGATG AAGTGATCCG CGAACATCCA
GTGATGCTTA ACCGTGCACC AACACTGCAC AGACTGGGTA TCCAAGCGTT CGAACCTGTA
CTGATTGAAG GTAAAGCAAT CCAGTTACAC CCACTCGTTT GTGCGGCATA CAACGCCGAC
TTCGACGGTG ACCAAATGGC GGTACACGTA CCGTTAACAC TGGAAGCGCA GCTTGAAGCT
CGTGCCCTGA TGATGTCAAC CAACAACATC CTGTCACCTG CGAACGGCGA GCCTGTAATC
ACTCCGTCTC AAGACGTGGT ATTAGGTCTG TACTACACCA GCCGTGAGCG TATCAACGGC
CGTGGTGAAG GTATGTACTT TATGTCTGTT GCTGAAGTTG AAAAAGCTTA CGCAACTGGC
GCTGCTGAAC TGCATGCCCG CGTGAAAGTG CGTATCACTG AAACCGTTAT CGGTGACAAT
GGTGAGCGTA CTGAACAACG TCGTATCGTA GATACAACAG TGGGTCGTGC TCTGCTGTCA
CAAATTCTGC CAGCAGGTTT GTCATTTGAT CTGGTTAACC AGAACATGGG CAAAAAGCAA
ATTTCTAAGC TATTGAACAC TTGTTACCGT CAATTAGGTC TGAAAGATAC CGTTATCTTC
GCTGACCAAC TGATGTACAC AGGTTTCCGT TACGCCACTA TCTCTGGTGC ATCTGTCGGT
ATCGACGACA TGGTGATCCC AGCTGAGAAG TACACCTTAG TTGCTGACGC TGAAGCAGAA
GTGCTCGAAA TTCAAGAGCA GTTCCAATCA GGTCTGGTGA CCGCGGGTGA GCGTTACAAC
AAAGTAATCG ACATCTGGGC AAGTGCGAAC GAAAAAGTTT CTAAAGCGAT GATGGAAAAC
CTGTCAACTG AGACAGTGAT TAACCGTGAT GGCGTTGAAG AGAAACAAGC TTCGTTCAAC
AGCATTTACA TGATGGCCGA CTCGGGCGCT CGTGGTAGTG CCGCACAGAT CCGTCAGTTA
GCGGGTATGC GTGGTCTGAT GGCGAAACCA GACGGTTCGA TCATCGAAAC CCCAATCGTG
GCGAACTTCC GTGAAGGTCT GAACGTTCTT CAGTACTTCA TCTCAACCCA CGGTGCGCGT
AAAGGTCTAG CCGATACCGC ATTGAAGACA GCGAACTCGG GTTACCTGAC TCGTCGTCTG
GTTGACGTTG CTCAAGACTT AGTGGTCATC GAAGACGATT GTGGTACTCA CGAAGGTCTG
ACAATGAAGC CGCTGATCGA AGGTGGTGAC GTTGTTGAGC CATTACGTGA ACGCGTACTG
GGTCGTGTGG TTGCTGTTGA TGTTATGTAC CCAGGTACAG AAGATGTGCT TGCGCCACGT
AACACTCTGC TCGATGAAGC ATGGTGTGAC AAGTTAGAAG AACACTCAAT CGACGAAGTG
ATTGTACGTT CAGTAATTAC CTGTGATACC GACTTCGGTG TGTGTGCGGC ATGTTATGGC
CGTGACTTAG CCCGTGGTCA CCTGATTAAC CACGGCGAAG CTATCGGTGT TGTCGCGGCG
CAATCAATCG GTGAACCTGG TACACAGTTA ACGATGCGTA CGTTCCACAT CGGTGGTGCG
GCATCGAGAG CGTCTGCAGA AAACAACGTT CAAGTGAAGA ACTCTGGTTC GTTGAAACTG
CACAACGCTA AGTACGTGAC TAACACTGAC GGCAAGCTGG TTATCGTTTC TCGTTCTTCT
GAACTGGCGA TCATCGACGA ATTAGGTCGT GAGAAAGAGC GTTATAAAGT GCCTTACGGT
ACTGTGCTCG AGAAGTTAGA AGAAGCATCA GTAGAAGCGG GCGATATCAT CGCTAACTGG
GATCCACATA CTCACCCAAT CATCACTGAA GTGGCGGGTA GTATTAAGTT CGTTGACATG
ATCGACGGCG TGACCATGAC TCGTCAAACA GACGAACTGA CAGGTCTGTC ATCAATCGTG
ATCCTCGACG TGGGTCAACG TGGTTCAGCG GGTAAAGAAA TGCGCCCAAT GATCCGTCTT
GTTGGTGCCG ACGGTAGCGA CCTGATGATC CCAGGTACTG AAGTGCCGGC ACAATACTTC
TTACCAGGCA GTGCGATCGT TAACCTTGAC GACAATGCGC AAATCGCCGT GGGTGACGCG
TTAGCACGTA TTCCACAAGA ATCGTCTAAA ACACGCGACA TCACGGGTGG TCTACCACGC
GTTGCTGACC TGTTCGAAGC CCGTAAGCCA AAAGAGCCAG CTATTCTGGC GGAAATCTCT
GGTACCATCT CGTTTGGTAA AGAGACCAAA GGCAAGCGTC GTCTGGTGAT CACACCAGCG
GATGGCGGAG AACATTACGA AGAGATGATC CCGAAATGGC GTAACTTAAA CGTGTTCGAA
GGTGAAAAAG TCGAACGTGG TGAAGTTATT GCTGACGGTC CAGAGGCGGC GCACGACATT
CTGCGTCTAC GTGGCATCCA CAACGTAGCA AACTACATTG TGAATGAAGT ACAAGACGTA
TACCGTCTAC AAGGCGTGAA GATCAACGAT AAACATATCG AAGTGATCAT CCGTCAAATG
CTGCGTAAGT GCGTGATCAC CTCTGCGGGT GACAGTGAGT TCTTAGAAGG CGAACAAGTC
GAAGTGTCTC GCGTCAAGAT TGCTAACCGC GAACTTGTCG AACAAGGCAA AGTGCCTGCG
ACCTTCGAAC GTGAACTGCT GGGTATTACC AAAGCGTCTC TGGCAACAGA ATCGTTTATC
TCTGCAGCAT CATTCCAAGA AACGACTCGC GTACTGACAG AAGCTGCCGT AGGTGGTAAG
TCTGATAACT TACGTGGTCT GAAAGAAAAC GTAATCGTTG GCCGCCTGAT CCCAGCCGGT
ACTGGTTATG CTTATCACAA GACTCGTAAC GATGCCCGTG CTAAGAAAGA CGAGCCAGTT
GTAGTGAATA AGATCACTGC AAGTGAAGCA GAACAAAATC TCGCAGACCT GTTAAACTTG
GCTGGCAGCC AAGATTAA
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| Protein sequence | MKDLLKFLKQ QSKTEEFNGI KIGLASPDLI RSWSFGEVKK PETINYRTFK PEREGLFCAR
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTQTKVRRE RMGHIELASP VAHIWFLKSL
PSRIGLMLDM TLRDIERVLY FESFVVIEPG MTSLERGQML TEENYLDALE EYGDEFEAKM
GAEAVLELLR AIDLEKEIEQ MREELPSINS ETRRKKVTKR LKLMEAFHTS GNKPEWMILK
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLAAPDI IVRNEKRMLQ
ESVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IYGKLEGRGL ATTIKAAKKM VEREVAEVWD VLDEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPVI TPSQDVVLGL YYTSRERING RGEGMYFMSV AEVEKAYATG
AAELHARVKV RITETVIGDN GERTEQRRIV DTTVGRALLS QILPAGLSFD LVNQNMGKKQ
ISKLLNTCYR QLGLKDTVIF ADQLMYTGFR YATISGASVG IDDMVIPAEK YTLVADAEAE
VLEIQEQFQS GLVTAGERYN KVIDIWASAN EKVSKAMMEN LSTETVINRD GVEEKQASFN
SIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIV ANFREGLNVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVI EDDCGTHEGL TMKPLIEGGD VVEPLRERVL
GRVVAVDVMY PGTEDVLAPR NTLLDEAWCD KLEEHSIDEV IVRSVITCDT DFGVCAACYG
RDLARGHLIN HGEAIGVVAA QSIGEPGTQL TMRTFHIGGA ASRASAENNV QVKNSGSLKL
HNAKYVTNTD GKLVIVSRSS ELAIIDELGR EKERYKVPYG TVLEKLEEAS VEAGDIIANW
DPHTHPIITE VAGSIKFVDM IDGVTMTRQT DELTGLSSIV ILDVGQRGSA GKEMRPMIRL
VGADGSDLMI PGTEVPAQYF LPGSAIVNLD DNAQIAVGDA LARIPQESSK TRDITGGLPR
VADLFEARKP KEPAILAEIS GTISFGKETK GKRRLVITPA DGGEHYEEMI PKWRNLNVFE
GEKVERGEVI ADGPEAAHDI LRLRGIHNVA NYIVNEVQDV YRLQGVKIND KHIEVIIRQM
LRKCVITSAG DSEFLEGEQV EVSRVKIANR ELVEQGKVPA TFERELLGIT KASLATESFI
SAASFQETTR VLTEAAVGGK SDNLRGLKEN VIVGRLIPAG TGYAYHKTRN DARAKKDEPV
VVNKITASEA EQNLADLLNL AGSQD
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