| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0192 |
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| Symbol | rpoB |
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| ID | 4250737 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 216244 |
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| End bp | 220221 |
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| Gene Length | 3978 bp |
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| Protein Length | 1325 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638116744 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_732330 |
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| Protein GI | 113968537 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.167231 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000258915 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGTTGGATA TTCCTTACCT TTTGTCTATT CAGTTAGACT CTTTTAAGAA GTTCACCGAT
CAAGATCCTA CCGGTGAGCG CGGTTTAGAA GCCGCCTTCC GTAGCGTTTT TCCCATCAAG
AGCTTTTCTG GTAATTCAGA ACTGCAATAC GTCAGCTATA AGCTTGGCGA GCCTGTTTTT
GATGTGAAAG AGTGTCAGAT CCGTGGTGTT ACATATTCAG CGCCACTACG CGTTAAATTA
CGCATGGTGT TGTATGATCG TGAAGCAGCG GCCGGCACTG TAAAAGATAT TAAAGAACAA
GAAGTCTACA TGGGTGATAT CCCATTAATG ACTGACAACG GTACCTTTGT GATCAACGGT
ACTGAGCGTG TAATCGTATC TCAATTACAC CGCAGCCCAG GCGTGTTCTT TGATCATGAC
CGTGGTAAAA CCCACTCATC AGGTAAGGTG CTGTATAACG CACGTATCAT TCCTTACCGT
GGTTCATGGT TAGACTTTGA ATTCGACCCT AAAGATGCAC TGTTCGTACG TATTGACCGT
CGCCGTAAAT TACCTGCGAC CATCATTCTG CGCGCATTAG AGTATTCTAC TCAAGAGATC
CTCGATCTGT TCTTCGAACG CGTTGAGTTC AAGATCAAGA AAGATACTCT GGTTATGACC
TTAGTACCTG AGCGTCTGCG TGGCGAAACC GCCAGCTACG ACATCAAGGA TGCTGAAGGC
TCTGTATTGG TTGAAGCTGG CCGTCGTATC ACTGCACGCC ACATTCGCCA ATTAGAAAAA
ACCAATACCA CTGAACTCGA AGTGCCAGTT GAGTACATCG TGGGCAAATA TGCTGCCCAA
GATTACATCG ATCCGGACAC GGGTGAAGTC TTAGTTTCTG CTAACAGTGA AATCAGCTTA
GAAGACTTAG CGAAGTTATC ACTGGCAGGC ATCAAAGAGC TAAGCACGTT ATACATCAAC
GAGCTAGACC ACGGTGCTTA CATCTCTGAC ACTCTGCGTA TCGATCCAAC CACTAACCGC
TTAGAAGCGT TAGTTGAGAT CTACCGCATG ATGCGTCCTG GTGAGCCACC AACCAAAGAT
GCAGCAGAAG CGCTGTTCCA AAACTTATTC TTCAGCGAAG AACGTTATGA CCTGTCTAAA
GTAGGTCGTA TGAAGTTCAA CCGTCGTCTC AGCATTCCTG ATGACGAAGG TAGCGGCGTA
CTGTCTAAAG AAGACATCGT TGCAGTAATG AAGAACATCA TTCACATCCG TAACGGCTTC
GACGAAGTGG ACGATATCGA CCACTTAGGT AACCGTCGAA TTCGTTCTGT GGGTGAAATG
GCTGAAAACC AATTCCGTGT TGGTCTGGTC CGTGTTGAGC GCGCCGTGCG TGAACGTCTG
TCATTAGGCG ATCTAAACGA GCTGATGCCA CAAGACTTAA TCAACGCTAA GCCAATTTCT
GCCGCAGTGA AAGAGTTCTT CGGTTCTTCT CAGCTGTCAC AATTCATGGA CCAAAACAAC
CCGCTGTCAG AAGTAACGCA TAAGCGTCGT ATTTCTGCTC TTGGCCCAGG TGGTTTGACC
CGTGAACGTG CAGGCTTCGA AGTCCGCGAC GTACACCCAA CGCACTATGG TCGTTTATGT
CCAATTGAGA CCCCTGAAGG TCCAAACATT GGTCTAATCA ACTCATTAGC GAGCTTTGCC
CGTACTAACT CTTACGGCTT CTTAGAAACC CCATACCGCA AAGTGGTAGA CGGTGTGATC
ACTGACGATG TGGAATACTT GTCGGCGATT GAAGAAGGTC GTTATGTGAT TGCACAGGCG
AACATCGAAG TTGACTCACA AGGTCGCATG GTTGAAGAAC AGATCGCATG TCGTCACAAA
GGTGAATCTA CCTTTATGCG TGCGTCTGAC ATTCAATACA TGGACGTATC GCCACAACAG
ATCATCTCTG TTGCTGCGTC TCTGATCCCG TTCTTAGAAC ACGACGACGC GAACCGTGCA
TTGATGGGTG CGAACATGCA ACGTCAAGCG GTACCAACAC TGAAATCAGA GAAGCCTCTG
GTCGGTACGG GTATTGAGCG CACGTTAGCT GTGGACTCCG GTGTAGTTGT TGCTGCCAAA
CGTGGCGGTG TGATCGATTA CGTTGATGCG AGCCGTATCG TTGTTAAAGT TAATGAAGAC
GAGCTGCGCC CAGGCGAAGC AGGTATCGAC ATTTACAACC TGACTAAGTA CACCCGTTCT
AACCAAAACA CTTGTATCAA CCAACGTCCA TGTTGTTCAG TTGGTGAGCC AGTGGTTCGT
GGTGACGTGT TAGCAGACGG TCCGTCTACT GACTTAGGTG ACTTAGCCCT TGGTCAGAAC
ATGCGTATCG CATTCATGCC TTGGAACGGT TACAACTTCG AAGACTCGAT CTTAATTTCT
GAGCGTGTTG CACAGGAAGA CCGTTTCACC ACTATCCACA TTCAAGAGCT GTCTTGTATC
GCTCGTGATA CCAAGCTGGG TAGTGAAGAA ATCACTGCTG ACATTCCAAA CGTAGGTGAA
TCTGCTCTGT CGAAACTCGA CGAGTCAGGT ATCGTTTACA TCGGTGCAGA AGTGAAGGGT
GGTGACATTC TGGTTGGTAA AGTTACGCCA AAAGGCGAGA CGCAACTGAC TCCAGAAGAG
AAGTTACTAC GCGCTATCTT CGGTGAGAAA GCGTCTGATG TGAAAGACAG CTCACTGCGT
GTACCTAACT CTGTTAAAGG TACCATCATC GACGTTCAGG TATTTACCCG TGACGGCGTT
GAGAAAGACA AACGCGCCAT TGAAATCGAA GAAATGCACA TTGCCCAAGC TCGTAAAGAC
TTAGGCGAAG AGTTCAAGAT CCTTGAAGAA GGCGTATTGA GCCGTGCGCG CAACTTATTA
TTAAGTGCCG GTTTCACTGA AGCACAAATC GCAGCATTGC CACGTAAAGA TGTATTGGTT
CAAGTTATTG ACGATGAAAC CAAACAAACT GAGCTTGAGC AATTAGCTGA ACAGCATGAA
GAGCTGAAAG CAGACTTCGA TAAGAAGTTT GAAATCAAAC GTCGCAAGAT CACCCAAGGT
GATGACTTGG CACCAGGCGT ACTGAAGATC GTTAAGGTTT ACTTAGCGGT TAAACGTACT
ATCCAACCAG GTGACAAGAT GGCGGGTCGT CACGGTAACA AGGGTGTTAT CTCTAAGATT
AACCCAATTG AAGACATGCC GTACGACGAG CAAGGCAACC CTGTGGACAT CGTATTGAAC
CCGCTAGGCG TTCCATCACG TATGAACATC GGTCAGGTTC TTGAAGTTCA CTTAGGTGCT
GCTGCTAAAG GTATTGGTAA CAAGATTGCT GCCATGCTGG AAGATCAGCG CGAGAAGGGA
CTTGCAGAAG TTCGTAGCTA CATCAAGCAA GTGTACGAAT TAGGTGACGA AGTGCAGCAG
CGCGTTGACA TCGATTCATT CACTGACGAT GAGTTACTGC GCTTAGCGAA CAACCTGAAA
GGCGGTATCC CAGTTGCTAC GCCAGCCTTC GACGGTGCTA AAGAGAAAGA GATCAAGCAG
ATGCTTGAGC TTGCAGGCTT GCCAACCTCT GGTCAGCTGA AATTATTTGA TGGTCGTACC
GGTAACGAAT TTGAGCGTCC AGTAACTGTA GGTTACATGT ACATGCTCAA ACTGAACCAC
TTAGTTGACG ATAAGATGCA CGCCCGTTCT ACCGGTTCGT ACAGCTTAGT GACTCAACAA
CCTCTGGGCG GTAAAGCTCA GTTCGGTGGT CAGCGTTTCG GGGAGATGGA AGTGTGGGCA
CTCGAAGCAT ACGGTGCCGC TTATACGCTT CAAGAAATGC TCACCGTGAA ATCGGATGAC
GTTAACGGTC GTACTCAGAT GTATAAGAAC ATCGTCGACG GTAACCATCA GATGCAGCCT
GGCATGCCAG AGTCCTTCAA CGTATTACTG AAGGAGATCC GTTCACTCGG TATCAACATC
GAGTTGGATC AGGAATAA
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| Protein sequence | MLDIPYLLSI QLDSFKKFTD QDPTGERGLE AAFRSVFPIK SFSGNSELQY VSYKLGEPVF
DVKECQIRGV TYSAPLRVKL RMVLYDREAA AGTVKDIKEQ EVYMGDIPLM TDNGTFVING
TERVIVSQLH RSPGVFFDHD RGKTHSSGKV LYNARIIPYR GSWLDFEFDP KDALFVRIDR
RRKLPATIIL RALEYSTQEI LDLFFERVEF KIKKDTLVMT LVPERLRGET ASYDIKDAEG
SVLVEAGRRI TARHIRQLEK TNTTELEVPV EYIVGKYAAQ DYIDPDTGEV LVSANSEISL
EDLAKLSLAG IKELSTLYIN ELDHGAYISD TLRIDPTTNR LEALVEIYRM MRPGEPPTKD
AAEALFQNLF FSEERYDLSK VGRMKFNRRL SIPDDEGSGV LSKEDIVAVM KNIIHIRNGF
DEVDDIDHLG NRRIRSVGEM AENQFRVGLV RVERAVRERL SLGDLNELMP QDLINAKPIS
AAVKEFFGSS QLSQFMDQNN PLSEVTHKRR ISALGPGGLT RERAGFEVRD VHPTHYGRLC
PIETPEGPNI GLINSLASFA RTNSYGFLET PYRKVVDGVI TDDVEYLSAI EEGRYVIAQA
NIEVDSQGRM VEEQIACRHK GESTFMRASD IQYMDVSPQQ IISVAASLIP FLEHDDANRA
LMGANMQRQA VPTLKSEKPL VGTGIERTLA VDSGVVVAAK RGGVIDYVDA SRIVVKVNED
ELRPGEAGID IYNLTKYTRS NQNTCINQRP CCSVGEPVVR GDVLADGPST DLGDLALGQN
MRIAFMPWNG YNFEDSILIS ERVAQEDRFT TIHIQELSCI ARDTKLGSEE ITADIPNVGE
SALSKLDESG IVYIGAEVKG GDILVGKVTP KGETQLTPEE KLLRAIFGEK ASDVKDSSLR
VPNSVKGTII DVQVFTRDGV EKDKRAIEIE EMHIAQARKD LGEEFKILEE GVLSRARNLL
LSAGFTEAQI AALPRKDVLV QVIDDETKQT ELEQLAEQHE ELKADFDKKF EIKRRKITQG
DDLAPGVLKI VKVYLAVKRT IQPGDKMAGR HGNKGVISKI NPIEDMPYDE QGNPVDIVLN
PLGVPSRMNI GQVLEVHLGA AAKGIGNKIA AMLEDQREKG LAEVRSYIKQ VYELGDEVQQ
RVDIDSFTDD ELLRLANNLK GGIPVATPAF DGAKEKEIKQ MLELAGLPTS GQLKLFDGRT
GNEFERPVTV GYMYMLKLNH LVDDKMHARS TGSYSLVTQQ PLGGKAQFGG QRFGEMEVWA
LEAYGAAYTL QEMLTVKSDD VNGRTQMYKN IVDGNHQMQP GMPESFNVLL KEIRSLGINI
ELDQE
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