| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0177 |
|---|
| Symbol | |
|---|
| ID | 4250722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 198095 |
|---|
| End bp | 198709 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638116720 |
|---|
| Product | DNA-binding transcriptional repressor FabR |
|---|
| Protein accession | YP_732315 |
|---|
| Protein GI | 113968522 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0234685 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTATTC GTGCACAGCA AAAAGAGAAA ACTCGGCGGG CATTAGTCGA TGCGGCGTTT
AACCAGCTCA GTGCTGAACG AAGTTTCTCT AGCTTAAGCT TGCGTGAGGT GGCGAGGGAA
GCCAACATTG CGCCCACATC CTTTTATCGT CATTTTAAGG ATATGAATGA GCTTGGGTTG
ACCATGGTCG ACGAAGGCGG GCTCACCCTA AGACAGATGA TGCGAAAGGG GCGGCAACGT
GCCGAAGCCG GGGGCAGCGT GATCCGTATT TCTGTGGATA CCTTTATGGA AGTGCTTGAT
TCTAATCCAA ACGTTTTCAG AATCTTATTA CATGAGCGCT CTGGTACCTC GGCAGCCTTC
CGCGCGGCGG TAGCCCGCGA GATTGAACAT TTTATCTCGG AACTTGCCCA TTACACCGAA
GCGACGGCGG GTCGTACGCC TATGCTGGCC AGAGCACAGG CTGAAGCGTT AGTGACCTTA
GTGTTTAACG CCGGAGCGTC GGCACTGGAT ATGAAGCGCG CCGATCGTAA AGTGCTCGCC
GATCAACTGG TGATGCAATT ACGTATGGTG GCTAAGGGCG CCGAAGCCTT ACAACATAAG
GTTGAGCATC GTTAA
|
|---|
| Protein sequence | MGIRAQQKEK TRRALVDAAF NQLSAERSFS SLSLREVARE ANIAPTSFYR HFKDMNELGL
TMVDEGGLTL RQMMRKGRQR AEAGGSVIRI SVDTFMEVLD SNPNVFRILL HERSGTSAAF
RAAVAREIEH FISELAHYTE ATAGRTPMLA RAQAEALVTL VFNAGASALD MKRADRKVLA
DQLVMQLRMV AKGAEALQHK VEHR
|
|---|
| |