| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0162 |
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| Symbol | |
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| ID | 4250690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 184002 |
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| End bp | 184763 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638116705 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_732300 |
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| Protein GI | 113968507 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.933728 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCCTTAA AACAAACTAA TGCTCAAAAG GGTTTTACCC TGCTGGAAAT GCTGATCGCG
ATTGCGATTT TTGCCATGTT AGGTTTAGCC GCCAATGCGG TACTCAGCAC AGTGCTGACC
AATGACGAAG TGACAAAAAA CTTCTCGGTG CGTTTAAAGG CACTGCAACA GGGCTTTGGC
GCCATTGAGC GCGACTTGGG GCAGATGGTT GCACGCACAC CCAGATTACT CGAAGGCGGC
CGAGGCACCA CAGTCTTCCA AACGGGTAAC GATATTTTAG ATTCGGAATC AGAGGCTTTA
GTTTTTTACC GTTTAGGCTG GCTCAACCCA GACGGTTTAT TGCCCCGTGG CAGCATACAG
TCAGTCGCCT ATGTTGTGCG TGAAGGAAGA TTAGAGCGTT GGTACTTTCC GTACCCTGAA
CCCGAATTTG GCGCAGAGCC AATGAAGACT GTGATTATCG ATAAGGTGCT CTCGGTCGAG
TATTCCTTCT TTATGGAGGA CAAATGGGAG CGCAAGATTG AGGCATCTAA GTTACCCAAA
GCCATCGCAA TGGAAATTGA GCTCGAAGGT TTAGGTAAAA TCCAACGTAA GTTTATGTTG
CCCTTGGGTG CGGCGGCGCC AGAGAAGTCC AATGAAGAGG ACAACAAGAA CGACAACGCC
GATGATAATA AAGAAAATAA CGGCGACCAA GAGAATAACG GTGATGGCAC AGGTAATGGT
GATCCCGATA AGGGCGACCC AGGCAATGAG GATGGCGCAT GA
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| Protein sequence | MSLKQTNAQK GFTLLEMLIA IAIFAMLGLA ANAVLSTVLT NDEVTKNFSV RLKALQQGFG
AIERDLGQMV ARTPRLLEGG RGTTVFQTGN DILDSESEAL VFYRLGWLNP DGLLPRGSIQ
SVAYVVREGR LERWYFPYPE PEFGAEPMKT VIIDKVLSVE YSFFMEDKWE RKIEASKLPK
AIAMEIELEG LGKIQRKFML PLGAAAPEKS NEEDNKNDNA DDNKENNGDQ ENNGDGTGNG
DPDKGDPGNE DGA
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