Gene Shewmr4_0161 details

Gene Information

• Locus tag: Shewmr4_0161
• ID: 4250689
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sp. MR-4
• Kingdom: Bacteria
• Replicon accession: NC_008321
• Strand: +
• Start bp: 183653
• End bp: 184021
• Gene Length: 369 bp
• Protein Length: 122 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 638116704
• Product: general secretion pathway protein I
• Protein accession: YP_732299
• Protein GI: 113968506
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2165] Type II secretory pathway, pseudopilin PulG
• TIGRFAM ID: [TIGR01707] general secretion pathway protein I; [TIGR02532] prepilin-type N-terminal cleavage/methylation domain

Plasmid Coverage information

• Num covering plasmid clones: 25
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 23
• Fosmid unclonability p-value: 0.890337
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAAATACG CTAAGGGTAT GACCCTACTC GAAGTGATAG TGGCCTTGGC GGTATTTGCC 
ATCGCCGCCG TTTCTATCAC CAAAAGCTTG GGTGAGCAGA TGGCGAATAT GCCGATTCTG 
GAGTCTCGCA CCCTTGCCCA ATGGGTGGCA GACAACCAGA TGGTCGATGC CAGGCTCGAT 
CCGCAATTTC CGGAAATCGG TAAAAAAGAA GGGCAGGTAG AACTCGCGGG CAAGGATTGG 
TACTGGCGTA AAGAAGTGGT GAAAACCACG GACGATAACT TTCGCATGAT CCGTATTAGT 
GTCAGCGAAG ATGAACGTTA TCAGCGTATT GCAGCACAAG TGAGCAGTTA TGTCCTTAAA 
ACAAACTAA 

 

Protein sequence

MKYAKGMTLL EVIVALAVFA IAAVSITKSL GEQMANMPIL ESRTLAQWVA DNQMVDARLD 
PQFPEIGKKE GQVELAGKDW YWRKEVVKTT DDNFRMIRIS VSEDERYQRI AAQVSSYVLK 
TN