| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0158 |
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| Symbol | |
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| ID | 4250880 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 181359 |
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| End bp | 182582 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638116701 |
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| Product | general secretion pathway protein F |
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| Protein accession | YP_732296 |
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| Protein GI | 113968503 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGCAT TTGAATATAA GGCGCTGGAC GCCAAGGGAA AACAGCTAAA AGGGGTGATT
GAGGCGGATA CCGCCAGACA TGCTCGTAGT CAGCTGCGTG ACCAACGCAT GATGCCGCTG
GAGATTTTGC CGGTCACCGA AAAGGAAGCC AAGGCAAAAG GCACCGGATT CTCGCCCTTT
AAACGCGGGA TTTCGGTGGC GGAATTAGCG TTGATCACCC GTCAAATCGC CACACTGGTC
GCGGCGGGCT TACCGATTGA GGAATGTCTC AAGGCGGTGG GTCAGCAATG TGAGAAGGCG
CGCCTAGCCA GTATGATCAT GGCGGTGCGC TCCCGCGTGG TGGAAGGCTA TAGTCTGGCC
GACTCTCTTG CCGAGTTTCC GCATATTTTC GATGACTTAT ACCGAGCTAT GGTGGCCTCG
GGTGAAAAAT CCGGTCACTT GGAAGTGGTG CTTAACCGCT TAGCCGATTA CACCGAGCGC
CGCCAGCAGC TGAAGTCCAA ACTGCAACAG GCGATGATTT ACCCCATTAT GCTGACCATT
GTTGCCATTG GTGTAGTGTC AGTGTTGCTG GCGGCTGTGG TACCAAAGGT GGTGGGGCAA
TTTGAACATA TGGGCGCCGA GTTACCCGCA ACGACCCGTT TCTTAATTGC CGCCTCTGAC
TTTGTGCAAA GCTATGGCCT ACTCGTGGTA TTGATTATTG GTATTTTGCT GGTGGTGTTT
CAGCGTTTAC TTAAGTCACC GATTTTCAAG ATGAAATACC ATACGTTTTT GCTGAAAATG
CCAGTGGTTG GCCGTGTGAG TAAAGGGCTT AATACCGCGC GATTTGCGCG AACTCTGAGT
ATTTTATCTG CCAGTTCGGT GCCTTTGTTA GATGGGATGC GCATTGCCAG CGAAGTATTG
CAAAATGTGC GGGTGCGGGC GGCGGTAGAT GATGCTACGG CGCGCGTACG GGAAGGAACT
AGCCTAAGCA CTGCGTTGAC TAACACTAAG CTGTTCCCGG CGATGATGTT ATATATGATC
GCCTCGGGGG AGAAGAGTGG TCAGCTCGAA GACATGCTTG AGCGCGCAGC TGATAACCAG
GATAGGGAAT TCGAGAGTAA TGTTACACTT GCCCTCGGGG TTTTCGAGCC GGCATTGGTG
GTGAGCATGG CGGGGGTTGT ACTCTTTATC GTGATGGCCA TTCTGCAACC TATCTTGGCA
CTGAACAATT TGATTAGTGG CTAG
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| Protein sequence | MPAFEYKALD AKGKQLKGVI EADTARHARS QLRDQRMMPL EILPVTEKEA KAKGTGFSPF
KRGISVAELA LITRQIATLV AAGLPIEECL KAVGQQCEKA RLASMIMAVR SRVVEGYSLA
DSLAEFPHIF DDLYRAMVAS GEKSGHLEVV LNRLADYTER RQQLKSKLQQ AMIYPIMLTI
VAIGVVSVLL AAVVPKVVGQ FEHMGAELPA TTRFLIAASD FVQSYGLLVV LIIGILLVVF
QRLLKSPIFK MKYHTFLLKM PVVGRVSKGL NTARFARTLS ILSASSVPLL DGMRIASEVL
QNVRVRAAVD DATARVREGT SLSTALTNTK LFPAMMLYMI ASGEKSGQLE DMLERAADNQ
DREFESNVTL ALGVFEPALV VSMAGVVLFI VMAILQPILA LNNLISG
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