| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0135 |
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| Symbol | ribB |
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| ID | 4250628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 152094 |
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| End bp | 152747 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638116678 |
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| Product | 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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| Protein accession | YP_732273 |
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| Protein GI | 113968480 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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| TIGRFAM ID | [TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 45 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.016472 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATCAGT CTTTACTTGC TCCTTTTGGT ACTGCTATCG AACGCGTTGA AGCGGGTCTT
GAAGCCCTGC GCCAAGGCCA AGGTGTGTTG GTCGTCGATG ACGAAGATAG AGAAAACGAA
GGCGACTTAA TTTTTGCCGC CGAGTCACTG ACCAATGCGC AAATGGCCAT GCTGATCCGC
GAATGCAGCG GTATCGTGTG TTTGTGTTTA CCAGATGAAA AGGTCAAAGC CCTTGAGCTG
CCACCTATGG TCGAAAACAA CTCGAGCCAA TATGGCACCG CGTTTACCGT GAGTATCGAA
GCCAAAGTGG GAGTCACCAC TGGCGTTTCG GCTGCGGACC GCGTCACCAC CATTAAAGCC
GCTATCGCCG ACAATGCTAA GCCAAGTGAT TTAGCTCGCC CAGGCCATGT GTACCCACTG
CGCGCCCAGC CCGGTGGTGT ATTAACTCGC CGTGGCCATA CCGAAGGCAC TATTGATTTA
ATGCAACTGG CCGGCCTCAA GCCTGCGGGC GTGTTATGTG AAGTCACCAA TCCCGATGGC
ACTATGGCGC GTCTGCCAGA AATCATCGCC TTTGGTGCAG CGCACAATAT GCCTGTGCTG
ACGATTGAAG ATATCGTTGT TTACCGTAAG TCGCTATTAG CCAATGTTGG CTAA
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| Protein sequence | MNQSLLAPFG TAIERVEAGL EALRQGQGVL VVDDEDRENE GDLIFAAESL TNAQMAMLIR
ECSGIVCLCL PDEKVKALEL PPMVENNSSQ YGTAFTVSIE AKVGVTTGVS AADRVTTIKA
AIADNAKPSD LARPGHVYPL RAQPGGVLTR RGHTEGTIDL MQLAGLKPAG VLCEVTNPDG
TMARLPEIIA FGAAHNMPVL TIEDIVVYRK SLLANVG
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