| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0134 |
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| Symbol | |
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| ID | 4250627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 148499 |
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| End bp | 151732 |
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| Gene Length | 3234 bp |
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| Protein Length | 1077 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638116677 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_732272 |
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| Protein GI | 113968479 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.0105152 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATCCA TGCTACAGCA TCTCAGCCTG AAGCAGAAAC TCATTCTGTT TTCACTGCTA
CCTTTGCTGA TGATGAGTAT TTTTGTACTG TCGCGGATGT ATGTACTTGT GAAGGAATAT
CGCTCCGCCA ATCAGAACCA TCTGGCAATC CAAGCGACAG CACAAACCAC TGAATTACTC
TTCCAACTGC ACAATGAATA CGGCCTCAGT GCCCAGCTTT CTGGCCCCGC GTCTCCTCAA
GAAGAAACAC GCCTCCTACA GCAGCAACAG ATCACCTCCG ATGCCTTAGA TGCGCTACTC
AATGGCTCGG CATTGAGCAA CTTGATGCCC GCTTTAGGCC GCAATCAACT CGCCGCCGTG
CAGTTGCAGG AGCAACTCAA TACTCTAACG CTGCTAAGTC ATAGGTTAGC GTCGGGGCGC
CAAGAGGCTC TAGATCAGCA TCCCAAGGCC TTTATCGATT TGTATAATCA GTTCAATACC
GAGCTGGTTA AACTCATCCA GCAACTACAG CTACAAACCA ACGATATTAG CCAATCTAGA
GCCTACACAG ATTTGCTTAA TTTGCTTATG GTGCAACAGC TGGCGGTAAA AGAGCGCAGT
GCCATTAATC ATATGTTGTT GTCGCAGGTG CTGAACATTA ATGATTACCG TGCGATTAGC
ACCATAATGT ACGAATACGG CCAAGCCATA GAACATGCCA GTAATGCCTC GATTTCCAAC
CGTCAGTCCT TAATCCGCAA GATGCAAACC TCTCCGGAAA ATCTGCGTAT CCTCAAGATT
AGCCAGCAAA TAGAGCAACA AATCCGCGTC AGCACCTTAG TACAGAATAT CAATGCCCAC
TTGGGCTACG GTGGTTTAAT CGATAGTTTT CAAGACTATT TGATTAAGGG AGACAATGCC
GCGCTGGATA AATTTACTAA GGCACTGTCG ATTATTCAGC TCAATCTCGA TGAGTTAAAT
CATGAGATCC GCAATATTCC TGATCTTAAG CCTGCGGTGA AAACCATTGA AGACGGTATA
GACCAATATC AGTTCTGCAT GAACCAGTTG CAGCAGTTGA AGCGTCAACA GCTATCACTC
GAAGAGATCA GCGCCCTTAT CCATGTGAAT GACAACGACC TGAGTGCCGC CATCAATAAA
CTATTGATGC CACCGCATCC GGTCAGCAGT AAGCACTGGT GGTCGCTCAC CAGCGATAGG
ATCAATAAGC TGCACACTAT CAGTGATGAA ATCACCGCAA ACATGGCACA TCAGAGTGAA
GTAGAACAGA CTAAGTCGCT CACATTGCTC GGGTTATATC TATTCTCCGC ACTTTTTACC
GCCGCGATTA CCCTCTGGCT CGGCCGCAAA ATTATTCGCA GCTTTATGGT TAAAATCACT
AGAATTGCCA ATGATATGCA GCGAATGGCC GCCGATCCGC AGCTCAATAT CAATATCGAT
GCTTCTGGCT CCGACGAGCT GGCACGCATG GCTCAGGCCA TGAATCGAAT GATCAGCGAA
CGCCAAAAGG CCAACCACGC CTTAAGCCGC GCCGCCGCCG TATTTAACTA TTCTGCCGAA
GGCATTATGG TCACGGATGC CGACAATCAT ATCGAGTTGG TTAACCCCGC CTTTAGCCAG
ATCACAGGTT ACAGCCTCGA AGAGGTTAAG GGCCGCAGCC CATCACTGTT AAGCTCCAAT
CGCCATCCCA GCCATTTCTA TACGGCTATG TGGGAAGCAT TACAAAAAGA AGGTAAATGG
GAAGGCGAGA TCTGGAATAA ACGTAAAGAT GGCCAAGTGT ATCCCGAGTA TCTTGCTATT
ACTGTGGTAC GTAATGAACG GGGTGAAATA ATCCAACATA TTGGTTTATT TATGGATATC
AGTAAGCGTA AGCAATATGA GCAGGATCTC TGGTATCAAG CAAACTTCGA CACACTCACT
GGGCTACCCA ATCGTAAGCT GTTTAACGAG CGCCTGCAGC ATGAAATCCA ACTCGCCCAA
CACGACTCCC GCAAGCTGGC GATTCTGCTG ATCGATTTAG ACCAATTCAA ATATATCAAT
GACGTCCAAG GCCATGCCAT GGGCGATCTC TTGTTACAAG ACGTGGCTAA GCGACTGGAA
AATATTGCTG GTAAGAACGA CTTTCTCGCC CGCATCGGTG GCGACGAATT TGTGCTTATC
CTCCCCCGCG TCACCAATGA GTTCGCGATT GAACATATGG CGAGCCGGAT CATTGAAACC
TTAGCCGCGC CCTTTAACTT GAATGAGCGG GAAATCCAAA TTTCTGCCAG CTTCGGCATT
GGCGTCTACC CCGAAGACGG GCTAGATGTG AGCTCCCTGA CCCGCAATAC CGAAATGGCC
ATGTATCAAG CAAAGGACGC CGGACGCAAT AACTTCAAGT ACTTCACCTC TGGCATGAAC
CAAGCCATGT TTGCCCGCAT GGAGCTTGAA CAACGGCTGC GCCGTGCCGT GGCACAAAAT
GAATTTACCT TACATTATCA ACCGATTGTG GATATGAAAA CGGGACAAAT CTGTAGTGTC
GAGGCGCTGA TCCGCTGGCA AGATCCCGAC TTAGGACTGA TCCCGCCAGA CCAGTTTATC
GGTATCGCCG AAGAAACTGG ACTCATCGAG CCTATGGGCG AATGGGTGCT CAACCAAGCC
ATGCATGATT TAAGACAATG GCAACATATG GGACTCAACC TGAATGTCGC CATCAATGTC
TCCAGCCGTC AGTGCATTAA CACCCGTGGC CTCGGCTTCG ACCAAGTATT GCAGGAATGC
TTTAACCGTC ACCATATCAA TCCCAGAAAC GTGCATATCG AGATCACCGA GAGCATGCTG
ATGGGCGATG CGAGCCACTG CCTAAGCACC CTAGAATCTA TTCGCCACCT AGGCTCGCAG
ATTTATATCG ATGACTTTGG TACAGGCTAT TCATCTTTGA GTTATTTGAA GAAATTCCCT
ATTTCGGTAA TCAAGATCGA CCGCAGTTTT GTGGAAAACG CCCTCGATAA CAGTTCTAAC
GCCAATCTAG TCAAAGCCAT TGTGATGATG GGCCAGAGCC TTGAAATGGA GCTTGTCGCC
GAGGGGATAG AAACCGAGGC CCAATGGAAA TTCCTCCGCG ACTTAGGTTG CCACTATGCA
CAAGGCTATT TGATCTCTAA GCCTCTGCCA TTTGATGAGA TTACGCCACT GCTCAACCAA
ACCTTGCCGA AAATCTTGTG CTTAGCGCCA CAAGAGAAGA GCATAAATAC TTGA
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| Protein sequence | MPSMLQHLSL KQKLILFSLL PLLMMSIFVL SRMYVLVKEY RSANQNHLAI QATAQTTELL
FQLHNEYGLS AQLSGPASPQ EETRLLQQQQ ITSDALDALL NGSALSNLMP ALGRNQLAAV
QLQEQLNTLT LLSHRLASGR QEALDQHPKA FIDLYNQFNT ELVKLIQQLQ LQTNDISQSR
AYTDLLNLLM VQQLAVKERS AINHMLLSQV LNINDYRAIS TIMYEYGQAI EHASNASISN
RQSLIRKMQT SPENLRILKI SQQIEQQIRV STLVQNINAH LGYGGLIDSF QDYLIKGDNA
ALDKFTKALS IIQLNLDELN HEIRNIPDLK PAVKTIEDGI DQYQFCMNQL QQLKRQQLSL
EEISALIHVN DNDLSAAINK LLMPPHPVSS KHWWSLTSDR INKLHTISDE ITANMAHQSE
VEQTKSLTLL GLYLFSALFT AAITLWLGRK IIRSFMVKIT RIANDMQRMA ADPQLNINID
ASGSDELARM AQAMNRMISE RQKANHALSR AAAVFNYSAE GIMVTDADNH IELVNPAFSQ
ITGYSLEEVK GRSPSLLSSN RHPSHFYTAM WEALQKEGKW EGEIWNKRKD GQVYPEYLAI
TVVRNERGEI IQHIGLFMDI SKRKQYEQDL WYQANFDTLT GLPNRKLFNE RLQHEIQLAQ
HDSRKLAILL IDLDQFKYIN DVQGHAMGDL LLQDVAKRLE NIAGKNDFLA RIGGDEFVLI
LPRVTNEFAI EHMASRIIET LAAPFNLNER EIQISASFGI GVYPEDGLDV SSLTRNTEMA
MYQAKDAGRN NFKYFTSGMN QAMFARMELE QRLRRAVAQN EFTLHYQPIV DMKTGQICSV
EALIRWQDPD LGLIPPDQFI GIAEETGLIE PMGEWVLNQA MHDLRQWQHM GLNLNVAINV
SSRQCINTRG LGFDQVLQEC FNRHHINPRN VHIEITESML MGDASHCLST LESIRHLGSQ
IYIDDFGTGY SSLSYLKKFP ISVIKIDRSF VENALDNSSN ANLVKAIVMM GQSLEMELVA
EGIETEAQWK FLRDLGCHYA QGYLISKPLP FDEITPLLNQ TLPKILCLAP QEKSINT
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