| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0102 |
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| Symbol | |
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| ID | 4250981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 113739 |
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| End bp | 116123 |
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| Gene Length | 2385 bp |
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| Protein Length | 794 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638116644 |
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| Product | formate dehydrogenase alpha subunit |
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| Protein accession | YP_732240 |
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| Protein GI | 113968447 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAACC ACTGGATCGA TATTAAAAAT TCTAACGTAG TGATTATTAT GGGCGGTAAT
GCCGCAGAGG CTCACCCTGT CGGATTCGGC TGGGTTACAG AAGCTATGCA GCATAACAAT
GCTAAGTTGA TTGTGGTTGA TCCACGTTTC AACCGCAGTG CGTCATTGGC AGATCACTAT
GCCCCAATCC GCTCAGGAAC TGACATAGCA TTCCTTCTGG GTGTGATTCG CTATTTGATT
TCGACCAATC AAGTTAACTT CGATTATGTG AAAGCCTATA CCAACGCCAG CTATCTGGTG
CGGGATGATT TTGACTTCCA TGACGGCCTA TTCTCAGGCT TTGATGAAGC AAAAGGCGAG
TACAACAAAG AATCCTGGTT CTACCAACTC GACGAAGACG GCTATGCCAA AGTGGATGAA
ACACTTGAGC ACCCGCGTTG TGTGTGGAAC TTACTCAAAC AACACGTAGA ACGTTATGAT
TTTGCAACGG TAAGTAATAT CACTGGTACG CCAACAGCGG ACTACCAAGT GGTATGTGAC
GCCATTGCGA GCACTCATAC TAAAGATCGT GTGGCAACCT TTATGTATGC GCTGGGCTGG
ACCCACCATA GTAAAGGTGC GCAGAACATC CGTTCTATGG CGATGATCCA GTTATTACTG
GGCAACATTG GTCAGTTAGG CGGTGGTGTT AACGCATTGC GTGGTCACGC CAACGTTCAA
GGTTCAACCG ACATGGGGCT ACTGGCTCAA AGTTTACCCG GTTACCTTAA ACTGCCAAAC
GATAAAGAAC CAACCTTAGC GGCTCACTTG GCGGCGAATA CGCCTAAGCC ATTGCGCCCA
GGCCAAACCA ACTACTGGCA AAACTATCCG AAGTTTTATG TGTCCCTGCT TAAAGCCTTC
TGGGGTGAAA ACGCGACGCC TGAAAACGAG TTCGGTTATC AGTGGTTACC TAAGTGGGAT
CAGATGTATG ACTTCGGTAA GCATCTGGAC ATGATGTACC GTGGCAAAGT GAACGGTTGC
ATCGTGCAAG GGGTTAACGC CATTAACTCC ATGCCTAACC GTAACAAGAA CATCAAGGCG
CTGAGTAACC TTAAGTACTT AGTGGTGCTT GATAACTTGT CATCGGAAAC CGCCACCTTC
TGGCAAAACG AACCCGGTTT TAACGAGGTC GATACCGCCA GTATTCAAAC CGAGGTCTTC
CGCCTACCTG CGACCGTGTT CGCAGAGGAA GAAGGTTCGA TCGTTAACTC TGGCCGCTGG
ATGCAATGGC ACTATAAAGG CGCTAATCCT CCAGGCGAAG CAATGTCGGA CTCAGAGATT
GTCTCTGGTC TGCTGCAGGA GCTAAAACAC CTCTATCGCG AAGAGGGTGG CAAACTGCCT
GAACCCATTG AAGCGATTAA CTGGAACTAT ATCGATCCGC ACAACCCAAG CTCTATCGAA
CTGACGAAAG AGTTAAATGG TTACGATGTC GCGACTAAGC GTCAGATCAG CAGCTTTGCT
GAACTGAAGG CCGATGGTAG TACCGCGAGT GCCTGTTGGA TTTACGCGGG GTCTTGGACC
GAAGCCGGTA ACCAAATGGC TCGCCGCGAT AACCATGACC CATCGGGTAA AGGTATTACG
CCGGGCTGGG CCTTCGCATG GCCGCTCAAC CGCCGCGTCC TCTACAACCG TGCCTCTTGT
GATGTGAACG GTAAACCTTG GGATGAGCAC CGTAAGATTG TTGAGTGGAA AGACGGCAAG
TGGGAAGGGA TAGACGTGCC CGACTTCAAT GCCAAGTTGA ATCCACAGGA AAGTGCGCAT
CCTTTCATTA TGCAGGCTGA AGGCGTAGGT CGTTTCTTCG CGCTCAAACT GCTTAAAGAG
GGACCCTTCC CAGAGCATTA CGAGCCTGTC GAATCGCCCA TCGGCACCAA CCCACTGCAT
CCCAATGTGG TGCACAGCCC TGTGCTGCGT TGGTTCGAAG GGGTGAAAGA CACCATAGGT
ACTAAAGAGG AATATCCCTA CGCCTGTACC ACTTACTCAC TTACAGAACA CTTTAACTTC
TGGACGACAC ACTGCCGTTT AGCGGCGATT GCCATGCCAG AGACCTTTGT GGAAATGAAT
GAGCAATTGG CGGCAGAAAA AGGCATTAAG AATGGCGATT GGGTGAAAGT GAGCTCGAAA
CGTGGCCACA TTCTCACCAA AGCCTTAGTG ACTAAGCGTA TGCGCCCATT GCAGGTCAAT
GGTCAAACGG TACACACACT CGGTATCCCA CGTCACGGCA GCCATAACGC GCTAACACGT
AAGGCCTATA GCTGTAACGT CCTTACCACT GAGATGGGGG ATGCCAACAC GGGTGTGCCT
GAGTACAAAG CGTTCCTCGT GAATGTTGAA AAGGCGGAGG TCTGA
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| Protein sequence | MTNHWIDIKN SNVVIIMGGN AAEAHPVGFG WVTEAMQHNN AKLIVVDPRF NRSASLADHY
APIRSGTDIA FLLGVIRYLI STNQVNFDYV KAYTNASYLV RDDFDFHDGL FSGFDEAKGE
YNKESWFYQL DEDGYAKVDE TLEHPRCVWN LLKQHVERYD FATVSNITGT PTADYQVVCD
AIASTHTKDR VATFMYALGW THHSKGAQNI RSMAMIQLLL GNIGQLGGGV NALRGHANVQ
GSTDMGLLAQ SLPGYLKLPN DKEPTLAAHL AANTPKPLRP GQTNYWQNYP KFYVSLLKAF
WGENATPENE FGYQWLPKWD QMYDFGKHLD MMYRGKVNGC IVQGVNAINS MPNRNKNIKA
LSNLKYLVVL DNLSSETATF WQNEPGFNEV DTASIQTEVF RLPATVFAEE EGSIVNSGRW
MQWHYKGANP PGEAMSDSEI VSGLLQELKH LYREEGGKLP EPIEAINWNY IDPHNPSSIE
LTKELNGYDV ATKRQISSFA ELKADGSTAS ACWIYAGSWT EAGNQMARRD NHDPSGKGIT
PGWAFAWPLN RRVLYNRASC DVNGKPWDEH RKIVEWKDGK WEGIDVPDFN AKLNPQESAH
PFIMQAEGVG RFFALKLLKE GPFPEHYEPV ESPIGTNPLH PNVVHSPVLR WFEGVKDTIG
TKEEYPYACT TYSLTEHFNF WTTHCRLAAI AMPETFVEMN EQLAAEKGIK NGDWVKVSSK
RGHILTKALV TKRMRPLQVN GQTVHTLGIP RHGSHNALTR KAYSCNVLTT EMGDANTGVP
EYKAFLVNVE KAEV
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