Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0100 |
Symbol | |
ID | 4250979 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 110959 |
End bp | 112500 |
Gene Length | 1542 bp |
Protein Length | 513 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 638116642 |
Product | histidine ammonia-lyase |
Protein accession | YP_732238 |
Protein GI | 113968445 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2986] Histidine ammonia-lyase |
TIGRFAM ID | [TIGR01225] histidine ammonia-lyase |
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Plasmid Coverage information |
Num covering plasmid clones | 38 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCAG TCAATCATTT AGTATTAACG CCCGGCAGTT TAAGTCTGGC GCAATTGCGT GAAATCAGCC GCCATAAGCT GACACTCGAA CTGGCGCCAG AGGCGATAAA CGATATCAAC ACCAGCGCGC AAATCGTGCA AAAGGTGTTG GATGAAGGTC GCACCGTTTA CGGCATCAAC ACGGGTTTTG GTCTGCTGGC CAACACTAAG ATTGCCCCGG AAGATCTGCA ATTACTGCAA CGCTCTATCG TGTTATCCCA CGCTGCGGGC ACGGGCCAAT ACATGCAGGA CGCGACCGTG CGCCTGATGA TGGTGTTAAA GATCAACTCC TTAAGCCGTG GCTTCTCGGG TATCCGTTTA GAAGTGATTA ATTTCCTTAT CAGCCTAGTG AACGCCGAGG TTTATCCTTG TGTGCCTGAA AAAGGTTCTG TGGGCGCCTC TGGCGACTTA GCGCCGTTAG CCCATATGTG TTTGCCGCTG TTGGGTGAAG GCGAGATGAG CTATCAAGGT CAGATTATTT CGGCCGCCGA AGGCTTAGAA ATCGCCGGCC TCAAGCCTAT CGATTTAGCC GCGAAGGAAG GCTTAGCCCT GCTCAACGGT ACTCAGGCTT CTACTGCTCT GGCGTTGGAA GGTCTGTTCC ACGCTGAAGA CTTGTTTGCT GCAAGCTCAG TGATTGGCGC CATGAGCGTC GAGGCAGCCA TGGGTAGTCG CAGTCCGTTT GACCCACGCA TCCATGCGGC TCGTGGTCAG AAAGGACAAA TCGATGCGGC CATGGTGTTC CGTCATCTGT TGGGCGAAGA GTCTGAAATC AGCTTAAGCC ACATCAACTG CGAGAAGGTG CAAGATCCTT ACTCACTGCG CTGCCAACCA CAGGTATTAG GTGCGTGCTT GACCCAAATC CGCCAAGCGG CCGAGGTGTT AGGCACAGAA GCCAACGGTG TGACCGATAA CCCGCTGGTA TTTCAAGATA CTGGCGATAT TATCTCCGGT GGTAACTTCC ACGCCGAGCC CGTTGCTATG GCAGCCGATA ATTTGGCGAT TGCGATTGCC GAATTAGGCG CGATTGCAGA GCGTCGTATC GCGCTGCTTA TCGACTCTAG CCTATCTAAA CTGCCACCTT TCCTGGTTAA AAATGGCGGG GTGAACTCGG GCTTTATGAT CGCCCAAGTG ACGGCGGCGG CATTGGCCTC TGAAAACAAA ACCTACGCCC ATCCAGCATC GGTCGACAGT TTACCGACCT CGGCCAACCA AGAAGACCAT GTGTCTATGG CGACCTTTGC GGCGCGCCGT TTACGGGATA TGAGCGAAAA CACCCGTGGC GTGTTAGCTG TTGAGTTATT GGCGGCCGCC CAAGGCTTGG ATTTCCGCGC GCCATTAATG CCAAGCAAAG CAGTGGCGCA GGCGAAGGCC GAGCTACGCG AAGTGGTTGC CTACTATGAT AAAGACAGAT ACTTTGCGCC GGATATCGAT GCGGCAACGG ATCTGCTTTA TACCGCCAGC TTCAATGCTT ACTTGCCCCA AGGCGTATTG CCGAGTCTGT AA
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Protein sequence | MKSVNHLVLT PGSLSLAQLR EISRHKLTLE LAPEAINDIN TSAQIVQKVL DEGRTVYGIN TGFGLLANTK IAPEDLQLLQ RSIVLSHAAG TGQYMQDATV RLMMVLKINS LSRGFSGIRL EVINFLISLV NAEVYPCVPE KGSVGASGDL APLAHMCLPL LGEGEMSYQG QIISAAEGLE IAGLKPIDLA AKEGLALLNG TQASTALALE GLFHAEDLFA ASSVIGAMSV EAAMGSRSPF DPRIHAARGQ KGQIDAAMVF RHLLGEESEI SLSHINCEKV QDPYSLRCQP QVLGACLTQI RQAAEVLGTE ANGVTDNPLV FQDTGDIISG GNFHAEPVAM AADNLAIAIA ELGAIAERRI ALLIDSSLSK LPPFLVKNGG VNSGFMIAQV TAAALASENK TYAHPASVDS LPTSANQEDH VSMATFAARR LRDMSENTRG VLAVELLAAA QGLDFRAPLM PSKAVAQAKA ELREVVAYYD KDRYFAPDID AATDLLYTAS FNAYLPQGVL PSL
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