Gene Shewmr4_0056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0056 
Symbol 
ID4250935 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp65316 
End bp66989 
Gene Length1674 bp 
Protein Length557 aa 
Translation table11 
GC content49% 
IMG OID638116598 
Productsignal transduction histidine kinase, LytS 
Protein accessionYP_732194 
Protein GI113968401 
COG category[T] Signal transduction mechanisms 
COG ID[COG3275] Putative regulator of cell autolysis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0698199 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000000126428 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
GTGCTCGAAA ATCAAATGAT GTTACTGGCG GTATTTGAAC GGGCAGCCTT GATGCTGATG 
ACCCTGTTCT TTTTAACCCG CACTCGACCG TTCCAGCGTT TATTCCAAAA GCGTAATCAC
ACCCCCGCAG AGCTGGTCTC TGTGGCGGCG ATATTTTGCT TATTTGCGGT GTTCAGTACT
TATACTGGCA TTGAGGTTGA AGGTGCGCTG GTTAACGTGC GGATTATCGC GATTATTTCC
GGCGGGATTC TATTTGGCCC TTGGGTTGGT ATTCCTGCAG GCGTGCTGTC GGGGCTACAT
AGATATCTGA TTGATATGGA TGGCGATACT TCTATCCCGT GTCTAATCGC CAGCATTATT
GCCGGTCTAA TGGCGACCTG GATTTACTAT AAATGTCCCA AATCTAAGTT GTGGATTTAT
GGCATTGCGG CGGGCATGTT GTGCGAAACA CTGACCATGT TGTTGATTTG GCTGCTGACA
GAGCCACACG AGGTAGGCGT TGAGATAGTG AGTCACATTG CCTATCCCAT GATCGCAGGC
ACTGTGTGTA TTGGACTTAT CATCAAGCTA GTGCAAGACC TCGACGATGA AAAAGAACTG
ATTGCCGCTA AGCAGGCCAA GCTCGCGCTG GATATTGCCA ACAAAACCTT ACCTTTCTTC
CGCAAAATTG ATCGCCAAGC CTTAGAGCAA GTGTGCGCCG TGATCCGTAA TGAAATCCAT
GCCGATGCCG TGGCGATTAC CGATACTCGC GATGTATTAG CCTATATGGG CGTTGGTAAA
GATTACTACG AGGTTGATGG TCATCAGGCC ATTAGTGAAA TGACGCAAAG GGCGATAGAG
CTAGATCAAA ACATTATTAA CAACGACTTA CGCCAATATC ATTTATCTGA TTTTCATTCG
GTCATCATAA TTCCGCTGCG CGAAAACGGC ACGGTAAGCG GTACGCTGAA GATTTATTAT
CGCAATAACT ACCGGATTAC CAGCTCGCTG CGGGAGATGG CGGTGGGCTT GTCGCAGTTG
ATTTCGACCC AGATTGAGGT GTCGCGCATC GAGCAACTGC AAGAGATGAC CCGTAAGGCG
GAGTTCACTG CACTGCAGAG CAAGATTAAC CCACACTTTT TGTTTAATGC CCTCAATGCG
ATTTCTTCTT TGATCCGCAT TCGACCACAG CAGGCGCGGG AGTTGATTGC CAATCTGGCC
GATTATCTGC GTTATAACTT AGACAAAGGC GATGAGCTGA TTGATATCCA AGAAGAAGTT
AAACAAGTAC GCGATTATGT GGCGATAGAG CAGGCGCGCT ATGGCGACAA GCTTGAAGTG
GTATTCGATG TCGACGATGT GCATTTTTGT GTGCCTTGTC TCCTGTTACA GCCGCTGGTG
GAAAACGCCA TTTTGCACGG CATTCAGCCG CGTAGTGCGC CGGGCAGAGT GACCATAGAG
GTGAAAAAAC TCGATGCTGG CATTCGGGTG GCCGTGCGTG ATACGGGTTA TGGCATTAGC
CAAGAGGTAA TTGATGGTGT CGCCGCCGGT CGTATCGAGA GCAGCAGTAT TGGACTGACG
AATGTGCACC AGAGGGTGAA GTTATTGTAC GGTGAAGGGC TACAGCTTAA ACGGCTAAAT
CCGGGGACCG AAGTTAGCTT TTATTTACCA GAAAATGAGG CGCAAGTATG TTAA
 
Protein sequence
MLENQMMLLA VFERAALMLM TLFFLTRTRP FQRLFQKRNH TPAELVSVAA IFCLFAVFST 
YTGIEVEGAL VNVRIIAIIS GGILFGPWVG IPAGVLSGLH RYLIDMDGDT SIPCLIASII
AGLMATWIYY KCPKSKLWIY GIAAGMLCET LTMLLIWLLT EPHEVGVEIV SHIAYPMIAG
TVCIGLIIKL VQDLDDEKEL IAAKQAKLAL DIANKTLPFF RKIDRQALEQ VCAVIRNEIH
ADAVAITDTR DVLAYMGVGK DYYEVDGHQA ISEMTQRAIE LDQNIINNDL RQYHLSDFHS
VIIIPLRENG TVSGTLKIYY RNNYRITSSL REMAVGLSQL ISTQIEVSRI EQLQEMTRKA
EFTALQSKIN PHFLFNALNA ISSLIRIRPQ QARELIANLA DYLRYNLDKG DELIDIQEEV
KQVRDYVAIE QARYGDKLEV VFDVDDVHFC VPCLLLQPLV ENAILHGIQP RSAPGRVTIE
VKKLDAGIRV AVRDTGYGIS QEVIDGVAAG RIESSSIGLT NVHQRVKLLY GEGLQLKRLN
PGTEVSFYLP ENEAQVC