| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0031 |
|---|
| Symbol | |
|---|
| ID | 4250717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 35929 |
|---|
| End bp | 36945 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638116570 |
|---|
| Product | DNA protecting protein DprA |
|---|
| Protein accession | YP_732170 |
|---|
| Protein GI | 113968377 |
|---|
| COG category | [L] Replication, recombination and repair
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0758] Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake |
|---|
| TIGRFAM ID | [TIGR00732] DNA protecting protein DprA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.912099 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00525591 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTGG ACGACCTCAG GCAAAGATTG GAGCATGAGA GGCACTCGCT CCCTTTGTCT
GACAATCTAC TCCATAGCTT AGTCATTGAT TATCAAAGGG TCGATGCTGC CCTCGAATGG
CAACAGCAGT CTGAACTACA CCACCTCGTT TGTTTTACCG ATCCCCTTTA TCCTCCATTA
CTCAAACAGT TACCCGATCC TCCAAGCGTC TTATTTATCA AAGGATGTGT TGAGGCGCTG
TTGTTCCCAT CGCTTGCGAT AGTGGGGAGT CGTAATGCGT CTCCCGGTGG ATTACAGGTT
GCTTATCAGT TAGCTCGAGA GATGTCCGCG CTAGGATTTA GTATCTGTAG TGGCATGGCG
ATGGGGATAG ATGGTGCGGC CCATAAAGCC TGTGTTGACC ACGGAGGCAG AACGCTTGCG
GTGCTGGGAA CCGGGATTGA TATTATTTAT CCGCGTCGAC ATAAGCAGCT TTATGAGGAT
ATTCAGCACC AAGGCTGTAT AATAAGCGAG TTTTGGCCGG ATATCGGGCC TTTTGCGGGC
AATTTCCCGA AACGAAACCG CATTATTAGC GGTCTTTCTT TAGGTACGCT GGTGGTTGAA
GCTTGCCGTA AGAGTGGTTC ACTCATCACC GCTAGGTTGG CCATGGAGCA GGGGCGTGAG
GTCTTTGCGG TTCCGGGCTC GATTCTCGGC GGCTTTCATC AAGGCTGCCA TGATTTATTA
AGGGATGGGG CAAAACTTGT GGAGAGTGCG GCCGATATAG TGGAAGAGTT GGTAAGTTTG
ACGGCTTTTC ACCTTGAAGA AGTCAACACT CGCCACCATA TACAGCAAGG TGAGATTTGT
GATTTGCCAT TTTCATCGCT GTTAGCTAGT GTAGGTTATG AAACTACAAC AATTGATGCT
GTAGTCGAAC ATAGTGGGAA AACGATAGAT CTGGTGTTAG AACAAATGCT TGAACTTGAG
TTGCAAGGTT GGGTTGTTGC AGTACCCGGT GGTTACGTCA GAGTAAAGAG GAGCTAG
|
|---|
| Protein sequence | MDVDDLRQRL EHERHSLPLS DNLLHSLVID YQRVDAALEW QQQSELHHLV CFTDPLYPPL
LKQLPDPPSV LFIKGCVEAL LFPSLAIVGS RNASPGGLQV AYQLAREMSA LGFSICSGMA
MGIDGAAHKA CVDHGGRTLA VLGTGIDIIY PRRHKQLYED IQHQGCIISE FWPDIGPFAG
NFPKRNRIIS GLSLGTLVVE ACRKSGSLIT ARLAMEQGRE VFAVPGSILG GFHQGCHDLL
RDGAKLVESA ADIVEELVSL TAFHLEEVNT RHHIQQGEIC DLPFSSLLAS VGYETTTIDA
VVEHSGKTID LVLEQMLELE LQGWVVAVPG GYVRVKRS
|
|---|
| |