| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0014 |
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| Symbol | |
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| ID | 4250613 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 17258 |
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| End bp | 18451 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638116553 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_732153 |
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| Protein GI | 113968360 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0000317011 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCTGCAAA CGGATCAAAC GCTTTTTGAA CAAATGCGGA TCACTGAGCT TGAGATTGAT
TTTCGCAAAT CCTTGTTCTC TTTTACCTTG GCGGATGTCA GAGCGCTTCA ATCCTTCAAG
CCTGTGATTG AAGCGAACAT AGACAAAATC GTTGATGACT TCTATGGCCT GCAAACCAGT
GTATCTGAAA TTGCGTTGTT GATTGGTGAC TCCGACACTC TGGCTCGTTT GCGTACCGCT
CAGAGACGCT ATGTGCTTGA CCTGTTTAAT GGTGTGTACG ATTTAGAATA TGTAAACAAC
CGCCTAAGGA TTGGCTTAGT GCACAAACGT ATCGGCGTCG AACCCAAACT CTACCTCTCT
GCCGTTCATA CCCTAAAAGA ACTGATTTAT GCGGAGATTA ACAACTCGGT TAAAGACGCC
GCTCAAAATG AACGCATTAG AATCGCCATC GACAAGCTAG TGCTTTTCGA TGTTACCTTA
GTGTTTGATA CATATATTCG CAGCTTGGTT TCTGAAATTG AGAACGCCAA AGACAAGGCG
GAACGTTACG CTCAAAGTAT GGAGAGCAAA GTCAAAGAGC GTACTCAACA ACTCGAAGAG
TTATCTCAAA CAGATCCATT AACCGGCTTA CTAAACGTGC GTCACTTGCA GGAATTTGCC
ACTCGCATCC TAAGAGCCGC GCAAAGACGT GCCGAACCCG TAAGCGTTAT TTATCTCGAT
GTGGATGACT TCAAACACTT TAATGATAGC CAAGGCCATA GAGCGGGAGA TGAAGTACTC
AGAGCCGTCG CTCAATCAAT AAAGGAAAGT ACCCGAGCGG AAGACCATTG TTTTCGCTAT
GGTGGTGATG AGTTTTGTAT CATCATGCCC AACTGCCGTG AGGAACAAGC CAGAGATCAT
TTTATCGAAC GCTTTAACCA GAATATCAAG CGCCATCTGA ATAACATCTC ATTAAGCTTT
GGCATCGTGG ATACTGGCCC CTACGACTAC GATGATGCCA ATACCCTAAT CCATAAAGCC
GATCAAAAAA TGTATAGCTA CAAACGCGCA CGAGCAGCTA AATCACAGTT ACCAGCGACG
GCAGCCAATG ATTTAAAAAC CGAGATGAGC AACATAGAGA CTCTAAACCT CGACGCAGCA
GAGTTCTGCC CCCATGAATC AGCTTCGCCA ATCATAGATA AAATCGCCGA ATAA
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| Protein sequence | MLQTDQTLFE QMRITELEID FRKSLFSFTL ADVRALQSFK PVIEANIDKI VDDFYGLQTS
VSEIALLIGD SDTLARLRTA QRRYVLDLFN GVYDLEYVNN RLRIGLVHKR IGVEPKLYLS
AVHTLKELIY AEINNSVKDA AQNERIRIAI DKLVLFDVTL VFDTYIRSLV SEIENAKDKA
ERYAQSMESK VKERTQQLEE LSQTDPLTGL LNVRHLQEFA TRILRAAQRR AEPVSVIYLD
VDDFKHFNDS QGHRAGDEVL RAVAQSIKES TRAEDHCFRY GGDEFCIIMP NCREEQARDH
FIERFNQNIK RHLNNISLSF GIVDTGPYDY DDANTLIHKA DQKMYSYKRA RAAKSQLPAT
AANDLKTEMS NIETLNLDAA EFCPHESASP IIDKIAE
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