| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0006 |
|---|
| Symbol | |
|---|
| ID | 4250605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 7124 |
|---|
| End bp | 7972 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638116545 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_732145 |
|---|
| Protein GI | 113968352 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000000487815 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATATAG AAGCGCTGCG CAGCTTTGTG GCATTTGTCG ATACCGGGAG TTTTACCCGC
GCGGCAATGC AAACCTATAA GACTCAATCT GCCGTCAGTA TGCAAATGAA GCGCTTAGAG
CAAGAGCTGG GAAAAACGCT CTTTGTAAAA GAGGGGCGAA ACTTAGTCTT ATCTACCGAA
GGCCAACGTT TTGGCTTATA CGCTAAGCAA TTACTGCAAC TACACGATGA GACTGTCACA
ACCATTAAGC AGACTCAAGT CGGCACGCAA TTGCATTTAG GTTGTCCCGA TGACTATGCC
GAATCCGTGT TACCGCGGAT AGTGGCGTTG TTACATGGTC ACATTAAGCA ACTCGATCTT
CAAATTACTT GCGCCTCAAG CCAAAAGCTG CGGATCATGC TGGATACCGG GCAACTCGAT
GCGGCGATAG TGACTCGTTT GCCCGAGTCC GATGAAGGCT ACTTATTACA AACCTCGAAA
GGCGTTTGGG TGAGCGCGAG TGGTTCGAAC TTGAGTGATG CCGATCCGTT ACCCATAGCG
CTTTTCCAAA AGGATTGTAA ATTCCATATT GCGGCGTTAG ATGGATTGAT GAAGCAAGAT
AGGCATTATC AGTTGTTGGC CTGTAGCAGC AGTGCTGCGG CTCTTAAAGC GATAGTGGCT
AAGGATTTGG CTATTAGTGC CATGGCTGAA TGCAGTGTAT CGGCATCACT GAATATTATT
GATTCTGAAA CACTTCCACC CTTGCCTGTG GTCGCCGTCG CACTGGTTAT TTCCGCTAAA
GCTTACTCAC CCATAAATGC GGAGTTGGCC AAGCAAATTG CGCGGGGCTA TCAAAGCTAC
TTGGAATAA
|
|---|
| Protein sequence | MDIEALRSFV AFVDTGSFTR AAMQTYKTQS AVSMQMKRLE QELGKTLFVK EGRNLVLSTE
GQRFGLYAKQ LLQLHDETVT TIKQTQVGTQ LHLGCPDDYA ESVLPRIVAL LHGHIKQLDL
QITCASSQKL RIMLDTGQLD AAIVTRLPES DEGYLLQTSK GVWVSASGSN LSDADPLPIA
LFQKDCKFHI AALDGLMKQD RHYQLLACSS SAAALKAIVA KDLAISAMAE CSVSASLNII
DSETLPPLPV VAVALVISAK AYSPINAELA KQIARGYQSY LE
|
|---|
| |