| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0002 |
|---|
| Symbol | |
|---|
| ID | 4250601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1482 |
|---|
| End bp | 2582 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638116541 |
|---|
| Product | DNA polymerase III, beta subunit |
|---|
| Protein accession | YP_732141 |
|---|
| Protein GI | 113968348 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) |
|---|
| TIGRFAM ID | [TIGR00663] DNA polymerase III, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000000577304 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000000023362 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTT CAATTGATAG GGACGCCCTA TTAAAGCCGC TTCAATTGGT TTGTGGTGCG
GTAGAAAGAC GCCATAACTT GCCTATTTTG GCAAATCTCC TTGTAGAAGT TAGTGGTCAC
TCACTCAAAA TGACAGGTAC TGACCTCGAA GTTGAGTTAG TGGGCCAGGC GGTCATTCAT
GGTGATATCG AAGAAGGTCG TACTACAGTT CCAGCTAAGA AGCTGTTAGA CATAGTTAAA
TCCTTACCCG AGCAAAGCGA GCTTAAGGTC GAGCAACAAG ATAACAAATG GTTGTTACGC
TCTGGCCGTA GCCGTTTCTC GCTGGCAACC CTGCCCGCTG AAGAATACCC CAATGTGGAA
GCCTTTCAGG CGGAAATCGA ATTTACCCTT AAGCAAGGCG TGCTGAAGTC ACTGATTGAT
GCGACTCAGT TTTCGATGGC GAACCAAGAC GTTCGTTACT ATCTGAATGG TTTATTGCTC
GAAACCGAAG GGAATGTGCT GCGCGCCATT GCTACCGACG GTCATCGCTT AGCCTTAAGT
CACAGAACCA TAGATGCGCA ATTACCTGAA AAACAAGTGA TCGTGCCCCG TAAAGGCGTG
ATGGAAATGG CGCGTTTGTT GGAAGCCGAT GATTTAGATA TCGCTATTGC CATTGGTGAT
AATGCTATTC GTGCGACCAC CAGCACCACA GTCTTTACCA GCAAATTAGT CGATGGTCGT
TTCCCCGATT ATCGCCGTGT GTTACCTAAG GGCGGTGATA AAATCGTTAT CGCCAGCCGT
AACCACTTCA AGCAAGCCTT AACCCGTGCT TCTATTTTAT CGAATGAGAA GTTTCGCGGT
GTACGCATTC AGTTAGAAGC GGGATTACTG AAAATCACCG CCAATAACCC AGAGCAGGAA
GAAGCGGAAG AAATCATCGA TGTGGATTAC AACAATCAGC CACTCGAAAT TGGTTTCAAC
GTCAGTTACT TATTGGATGT GCTAAACAAC CTTAAGTCCG ATGATGTACG TATCACCTTA
ATCGATGGTA ACTCGAGTGC TTTATTGGAA AACCACCTGG AAGAAGATTC CATGTATGTG
GTTATGCCGA TGCGCTTATA G
|
|---|
| Protein sequence | MKFSIDRDAL LKPLQLVCGA VERRHNLPIL ANLLVEVSGH SLKMTGTDLE VELVGQAVIH
GDIEEGRTTV PAKKLLDIVK SLPEQSELKV EQQDNKWLLR SGRSRFSLAT LPAEEYPNVE
AFQAEIEFTL KQGVLKSLID ATQFSMANQD VRYYLNGLLL ETEGNVLRAI ATDGHRLALS
HRTIDAQLPE KQVIVPRKGV MEMARLLEAD DLDIAIAIGD NAIRATTSTT VFTSKLVDGR
FPDYRRVLPK GGDKIVIASR NHFKQALTRA SILSNEKFRG VRIQLEAGLL KITANNPEQE
EAEEIIDVDY NNQPLEIGFN VSYLLDVLNN LKSDDVRITL IDGNSSALLE NHLEEDSMYV
VMPMRL
|
|---|
| |