| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_5068 |
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| Symbol | |
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| ID | 4246723 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Trichodesmium erythraeum IMS101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008312 |
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| Strand | - |
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| Start bp | 7732475 |
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| End bp | 7733635 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638109869 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_724445 |
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| Protein GI | 113478384 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.651182 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.814117 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCCAGA CTGACAAAGT AATTGAAACC ACTATTCAGC CTCAGCTAGA ATCTAGTGAG
TTATTTCAGC CAACCCCTAC CAGACAAGTA AACGATGAGT TAGAGATTTT AATTGGAGAT
AGAGAAGAAT ATATAGATGC TCAGTCTGAT GAGGACGATC TAAAGTCTGG TAAAGTTGCT
AAATCTCGTA CTCGGACTGC GGGCAAAAAA AAGCATTATA CAGAAGACTC AATTCGCCTT
TATCTACAAG AAATAGGAAG AATCAGACTA TTACGAGCTG ATGAAGAAAT TGAATTAGCC
CGTAAGATTG CTGACTTACT AGAATTGGAA CGAATTCGAG AAGAGTTAAT TTATCACTTA
GATCGAGAAC CCCAAGTGAG TGAGTGGGCA AATGCAGTAG ATATGGAATT GCCAAAGTTT
AAGCGTCGCT TAATACTTGG GCGTAGAGCT AAAGAAAAGA TGGTACAGTC TAACCTGCGT
TTGGTGGTTT CGATCGCCAA AAAGTACATG AACCGAGGTT TATCATTCCA GGACTTGATT
CAAGAAGGTA GTTTGGGGTT AATTCGAGCA GCAGAAAAAT TTGATCATGA AAAGGGGTAT
AAATTTAGTA CTTATGCAAC TTGGTGGATT CGTCAAGCTA TTACTAGAGC TATAGCTGAT
CAGTCTCGTA CTATCCGTCT ACCAGTTCAT CTATACGAAA CAATATCCCG AATCAAGAAA
ACTACTAAGC TTCTTTCCCA AGAAATGGGT CGTAAACCCA CAGAAGAGGA AATAGCAACT
AGCATGGAAA TGACTATCGA AAAGTTGCGT TTCATTGCTA AATCTGCTCA ACTTCCCATA
TCTTTAGAAA CTCCCATTGG AAAAGAAGAA GACTCTCGAC TTGGAGATTT TATTGAGTCA
GATGGGGAGA CTCCTGAAGA TGAAGTATCC AAAAATCTAT TGCGAGAAGA TTTAGAAAGT
GTTTTAAATA GTTTGAGTCC CCGTGAACGG GATGTATTAC GGTTAAGGTA TGGCTTGGAT
GACGGTCGAA TGAAGACTTT AGAAGAAATT GGGCAAATAT TTAATGTGAC TCGTGAGCGA
ATTCGACAAA TTGAGGCAAA AGCCCTTAGA AAGTTACGAC ATCCAAACCG AAACAGTATT
CTCAAAGAAT ATATCCGCTA G
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| Protein sequence | MIQTDKVIET TIQPQLESSE LFQPTPTRQV NDELEILIGD REEYIDAQSD EDDLKSGKVA
KSRTRTAGKK KHYTEDSIRL YLQEIGRIRL LRADEEIELA RKIADLLELE RIREELIYHL
DREPQVSEWA NAVDMELPKF KRRLILGRRA KEKMVQSNLR LVVSIAKKYM NRGLSFQDLI
QEGSLGLIRA AEKFDHEKGY KFSTYATWWI RQAITRAIAD QSRTIRLPVH LYETISRIKK
TTKLLSQEMG RKPTEEEIAT SMEMTIEKLR FIAKSAQLPI SLETPIGKEE DSRLGDFIES
DGETPEDEVS KNLLREDLES VLNSLSPRER DVLRLRYGLD DGRMKTLEEI GQIFNVTRER
IRQIEAKALR KLRHPNRNSI LKEYIR
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