Gene Tery_4505 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTery_4505 
Symbol 
ID4246159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTrichodesmium erythraeum IMS101 
KingdomBacteria 
Replicon accessionNC_008312 
Strand
Start bp6951779 
End bp6954697 
Gene Length2919 bp 
Protein Length972 aa 
Translation table11 
GC content35% 
IMG OID638109388 
Productouter membrane efflux protein 
Protein accessionYP_723964 
Protein GI113477903 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.300614 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGTTT TTCGTAATAT TTTGGTAGTA GGAGTTATTG GAGTAGTTCT TTCAGATGGA 
GGGGAGAGTT TTTCAGCCCC ATTACCTATT CATCTGCAAA GTAATGCTCC TGAAAATTCG
ATGTTGGACC CAGAAGAGGT CAAAGGAAAA TCTGTTGAGG TTAAAGAAAC TCAAGGAGAA
GAGTCAGATG TTAGCTCTTT GGAAAAAGTT ACTCAATTGA AACCTGAAGG TAGTTTACTA
AAAAAGTTAA AGTCAAATTA TTCAGGTATA AAGGTACCAT CAAACAGATA CTCAGAAGTC
AATATAAATA AACAACTACC TAAGTTAAAA CCTAATAAAG AGAGAATTTC TGCATTAAAA
GAACTCGAAA ATCTATACAA AAATAAAGAT AGTTTATTGG CAAAATTAAA ATTCCCTATA
AAAGAAGAAA ATATCTCTCC TTCAGCATTA CAATTTAAAC AAAATATTAA TCATAATTTT
GCAGCTAACA AGAATCAAAA AATTAGGATA GATTCAGAAA AGAATGTGGA GAGTCTGGGG
AAATCTAATT CTAGTATTTT AGAATTGTTG GAGTCAAAAT CAGAAAATTC TGAAGAAAAT
ATCTCTCCTT CAGCATTACA ATTTAAACAA AATATTAATC ATAATCTTGC AGCTAACAAG
AATCAAAAAA TTAGGATAGA TTCAGAAAAG AATGTGGAGA TTTTGGGTAA GTCTAATTCC
AGTTTATTAG AATTGCTGGA GTCAAAATCT GGAAAATTAG AGGTAGCAAA TCAAATAAAT
TTTTCTGAAG AAATTAGCTT TCAAGAATCA ATTACTTTTT CAAATAATCC AGAAAGATTA
AGCATAGATT CAGAAAATAA TGTGGAGAAT CTGGGTAAAT CAAATTCTAT ATTTTTAGAA
TTGCTGGAGT CAAAATCTGG AAATTTAGAG GTAGCAAATC AAATAAATTT TTCTGAAGAA
ATTAGCTTTC AAGAATCAAC TAATTTATTA AATCATGCAG AAATATTTAA CTTGGATTTA
GAAAAATATC AAGTTGAAAA TGGAAAAAAT CAGACAGACT TAAAGGCATC AACACCAGAA
ATTAAGAATC AAAAAAATGA GACTAATAAT AGTGAAAAAA TATCCGAAAG AAATCCAATT
CTAGGAAATT CTTACCAAGT GATGACTAGT ATAAATCGTG CTCCTACAAT GGCAACAATA
AATGATTTAT CAGAGGTTGA AACCCAGGCA TCTGTATTAA ATAATCCGCA AAAAAATAAA
AATAATCCAA TTAGATTAGT AGGAAGAACC AATAATAGTC TAGTCTCAAT TATTCAGCGT
CCACCTACTT TTGGAAATAC TTCAAAACAG CAAAATTCTG TTCAGATAAA GACTGGTCTC
AATCAAACTT CAACTATGAA TACTGTTCCT AATTTAGCTA GGGTTGAGAA TCAAAAACAT
TTATCAAATA ATAGTAGCTT GATTATTGCT CAACAAAATA ATGAAAGTTT TCCTCCACCA
GTACCCAATG GAACCTTACA AACAAATCCT CCTCCTCAAA TAGAACCAAA TTCCAATCCA
CTATACTTTC CCGTTACTCC TGATCAAGTA CAGATAAAAG AAACAATACC AATTACTTTA
GAGGAAGCTA TTGATTTAGC GCGACGCAAT AACCCAGATA TCCAAATTGT TCAACTAGAA
GTTGACAGGA GTAAAGCTGC TCTGCGAGAA GCTCAAGCTG CTTTGTGGCC TAGTCTGACT
TTTGAATCAG TTATAGAACG TACAGAAAGT GCTTTTGGTG ACTTGCAAGC ACAGGCTCAA
AAACGAGTCA ATAAGGTAAC AGGAAGAGAC GAGCTCATAG ATACTGATAT TCAAAATTTC
CCGACTACAA CTTTTAACAA TACATTTCGA TTTGATTATG ACCTTGGTCT TGGTAAAGCT
CGTTCTTCAA GAATTGGAGT TGCTAGGGAA CAAATACGTC TACGGGAGTT AGAATTAGAG
AGGTTTTCAG AAGAATTACG TCTGAATGTA TCGGACGATT ATTATAATTT ACAACAAGCA
GATGGACGGG TTAAAATTGG AGAAGCTGCT GTTAGAAATT CTCGCAAAAG TTTGGAAGAT
GCGGAAGCTT TAGAAAGAGC AGGAGTAGGA ACTAGATTTG ATGTATTGCA AGCTCAGGTA
ACATTATCTA ATGAACAACA AAGTCTGACA AATGCTCTTC GAGATCAACG TACTACCCAA
CGTCGTTTGG CAGAAAGACT AAGTGCCAAT GAGTTGATAA ATTTGACGGC TGCCGATCCA
ATTGAGCCAG TGGGGTCTTG GCCTTTATCT TTAGATGAAA CAATTGTGGC AGCTTTTCGG
AACCGAGCTG AGTTAGAACA GCAGTTAGTG CAAAGAGATT TAAGTGATGA GCAGCGGAAA
CTAGCTCTTT CATCAGTTAG ACCAAGCTTG AATTTTTTTG CTACCTACAA TGTTTTAGCA
TTAACTACTG AGAACCAAAG TTGGCGAGCA GCTAGGGGTT GGGCTGATGG TAGTACAATA
GGATTGAGGT TTAGATGGAA TTTCTTTGAT GGTGGTGCAG CAAGGGCTTC TGCTAGACAA
AGTATACTGA ATGGGGAGAT TGCAGAGACT AGGTTTGAGC AGGTTAGAAA TCAGATTCGT
CGGGAAGTTG AGGAAGCTTT CTTTGGTTTG GAAGCTAGCT TTGAGAATAT TGATACTGCT
GAGTTGGGTG TGGAGCAGGC GAAGGAAGCT TTACGTTTGG CGAGATTACG ATTTCAAGCA
GGTGTGGGAA CTCAGTTAGA AGTTATTCAA CAGGAGACGG ATTTGACTAG GGCTGAGGAT
AATTTGTTAA GGGCGATAAT TGACTATAAT CGTTCTTTGT CGGAACTGCA ACGAGCTGTG
AGTAATCTTC CTGATGGGAG TTTGTCAAAT AATCCTTAA
 
Protein sequence
MSVFRNILVV GVIGVVLSDG GESFSAPLPI HLQSNAPENS MLDPEEVKGK SVEVKETQGE 
ESDVSSLEKV TQLKPEGSLL KKLKSNYSGI KVPSNRYSEV NINKQLPKLK PNKERISALK
ELENLYKNKD SLLAKLKFPI KEENISPSAL QFKQNINHNF AANKNQKIRI DSEKNVESLG
KSNSSILELL ESKSENSEEN ISPSALQFKQ NINHNLAANK NQKIRIDSEK NVEILGKSNS
SLLELLESKS GKLEVANQIN FSEEISFQES ITFSNNPERL SIDSENNVEN LGKSNSIFLE
LLESKSGNLE VANQINFSEE ISFQESTNLL NHAEIFNLDL EKYQVENGKN QTDLKASTPE
IKNQKNETNN SEKISERNPI LGNSYQVMTS INRAPTMATI NDLSEVETQA SVLNNPQKNK
NNPIRLVGRT NNSLVSIIQR PPTFGNTSKQ QNSVQIKTGL NQTSTMNTVP NLARVENQKH
LSNNSSLIIA QQNNESFPPP VPNGTLQTNP PPQIEPNSNP LYFPVTPDQV QIKETIPITL
EEAIDLARRN NPDIQIVQLE VDRSKAALRE AQAALWPSLT FESVIERTES AFGDLQAQAQ
KRVNKVTGRD ELIDTDIQNF PTTTFNNTFR FDYDLGLGKA RSSRIGVARE QIRLRELELE
RFSEELRLNV SDDYYNLQQA DGRVKIGEAA VRNSRKSLED AEALERAGVG TRFDVLQAQV
TLSNEQQSLT NALRDQRTTQ RRLAERLSAN ELINLTAADP IEPVGSWPLS LDETIVAAFR
NRAELEQQLV QRDLSDEQRK LALSSVRPSL NFFATYNVLA LTTENQSWRA ARGWADGSTI
GLRFRWNFFD GGAARASARQ SILNGEIAET RFEQVRNQIR REVEEAFFGL EASFENIDTA
ELGVEQAKEA LRLARLRFQA GVGTQLEVIQ QETDLTRAED NLLRAIIDYN RSLSELQRAV
SNLPDGSLSN NP