Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tery_4505 |
Symbol | |
ID | 4246159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Trichodesmium erythraeum IMS101 |
Kingdom | Bacteria |
Replicon accession | NC_008312 |
Strand | - |
Start bp | 6951779 |
End bp | 6954697 |
Gene Length | 2919 bp |
Protein Length | 972 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 638109388 |
Product | outer membrane efflux protein |
Protein accession | YP_723964 |
Protein GI | 113477903 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.300614 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGTTT TTCGTAATAT TTTGGTAGTA GGAGTTATTG GAGTAGTTCT TTCAGATGGA GGGGAGAGTT TTTCAGCCCC ATTACCTATT CATCTGCAAA GTAATGCTCC TGAAAATTCG ATGTTGGACC CAGAAGAGGT CAAAGGAAAA TCTGTTGAGG TTAAAGAAAC TCAAGGAGAA GAGTCAGATG TTAGCTCTTT GGAAAAAGTT ACTCAATTGA AACCTGAAGG TAGTTTACTA AAAAAGTTAA AGTCAAATTA TTCAGGTATA AAGGTACCAT CAAACAGATA CTCAGAAGTC AATATAAATA AACAACTACC TAAGTTAAAA CCTAATAAAG AGAGAATTTC TGCATTAAAA GAACTCGAAA ATCTATACAA AAATAAAGAT AGTTTATTGG CAAAATTAAA ATTCCCTATA AAAGAAGAAA ATATCTCTCC TTCAGCATTA CAATTTAAAC AAAATATTAA TCATAATTTT GCAGCTAACA AGAATCAAAA AATTAGGATA GATTCAGAAA AGAATGTGGA GAGTCTGGGG AAATCTAATT CTAGTATTTT AGAATTGTTG GAGTCAAAAT CAGAAAATTC TGAAGAAAAT ATCTCTCCTT CAGCATTACA ATTTAAACAA AATATTAATC ATAATCTTGC AGCTAACAAG AATCAAAAAA TTAGGATAGA TTCAGAAAAG AATGTGGAGA TTTTGGGTAA GTCTAATTCC AGTTTATTAG AATTGCTGGA GTCAAAATCT GGAAAATTAG AGGTAGCAAA TCAAATAAAT TTTTCTGAAG AAATTAGCTT TCAAGAATCA ATTACTTTTT CAAATAATCC AGAAAGATTA AGCATAGATT CAGAAAATAA TGTGGAGAAT CTGGGTAAAT CAAATTCTAT ATTTTTAGAA TTGCTGGAGT CAAAATCTGG AAATTTAGAG GTAGCAAATC AAATAAATTT TTCTGAAGAA ATTAGCTTTC AAGAATCAAC TAATTTATTA AATCATGCAG AAATATTTAA CTTGGATTTA GAAAAATATC AAGTTGAAAA TGGAAAAAAT CAGACAGACT TAAAGGCATC AACACCAGAA ATTAAGAATC AAAAAAATGA GACTAATAAT AGTGAAAAAA TATCCGAAAG AAATCCAATT CTAGGAAATT CTTACCAAGT GATGACTAGT ATAAATCGTG CTCCTACAAT GGCAACAATA AATGATTTAT CAGAGGTTGA AACCCAGGCA TCTGTATTAA ATAATCCGCA AAAAAATAAA AATAATCCAA TTAGATTAGT AGGAAGAACC AATAATAGTC TAGTCTCAAT TATTCAGCGT CCACCTACTT TTGGAAATAC TTCAAAACAG CAAAATTCTG TTCAGATAAA GACTGGTCTC AATCAAACTT CAACTATGAA TACTGTTCCT AATTTAGCTA GGGTTGAGAA TCAAAAACAT TTATCAAATA ATAGTAGCTT GATTATTGCT CAACAAAATA ATGAAAGTTT TCCTCCACCA GTACCCAATG GAACCTTACA AACAAATCCT CCTCCTCAAA TAGAACCAAA TTCCAATCCA CTATACTTTC CCGTTACTCC TGATCAAGTA CAGATAAAAG AAACAATACC AATTACTTTA GAGGAAGCTA TTGATTTAGC GCGACGCAAT AACCCAGATA TCCAAATTGT TCAACTAGAA GTTGACAGGA GTAAAGCTGC TCTGCGAGAA GCTCAAGCTG CTTTGTGGCC TAGTCTGACT TTTGAATCAG TTATAGAACG TACAGAAAGT GCTTTTGGTG ACTTGCAAGC ACAGGCTCAA AAACGAGTCA ATAAGGTAAC AGGAAGAGAC GAGCTCATAG ATACTGATAT TCAAAATTTC CCGACTACAA CTTTTAACAA TACATTTCGA TTTGATTATG ACCTTGGTCT TGGTAAAGCT CGTTCTTCAA GAATTGGAGT TGCTAGGGAA CAAATACGTC TACGGGAGTT AGAATTAGAG AGGTTTTCAG AAGAATTACG TCTGAATGTA TCGGACGATT ATTATAATTT ACAACAAGCA GATGGACGGG TTAAAATTGG AGAAGCTGCT GTTAGAAATT CTCGCAAAAG TTTGGAAGAT GCGGAAGCTT TAGAAAGAGC AGGAGTAGGA ACTAGATTTG ATGTATTGCA AGCTCAGGTA ACATTATCTA ATGAACAACA AAGTCTGACA AATGCTCTTC GAGATCAACG TACTACCCAA CGTCGTTTGG CAGAAAGACT AAGTGCCAAT GAGTTGATAA ATTTGACGGC TGCCGATCCA ATTGAGCCAG TGGGGTCTTG GCCTTTATCT TTAGATGAAA CAATTGTGGC AGCTTTTCGG AACCGAGCTG AGTTAGAACA GCAGTTAGTG CAAAGAGATT TAAGTGATGA GCAGCGGAAA CTAGCTCTTT CATCAGTTAG ACCAAGCTTG AATTTTTTTG CTACCTACAA TGTTTTAGCA TTAACTACTG AGAACCAAAG TTGGCGAGCA GCTAGGGGTT GGGCTGATGG TAGTACAATA GGATTGAGGT TTAGATGGAA TTTCTTTGAT GGTGGTGCAG CAAGGGCTTC TGCTAGACAA AGTATACTGA ATGGGGAGAT TGCAGAGACT AGGTTTGAGC AGGTTAGAAA TCAGATTCGT CGGGAAGTTG AGGAAGCTTT CTTTGGTTTG GAAGCTAGCT TTGAGAATAT TGATACTGCT GAGTTGGGTG TGGAGCAGGC GAAGGAAGCT TTACGTTTGG CGAGATTACG ATTTCAAGCA GGTGTGGGAA CTCAGTTAGA AGTTATTCAA CAGGAGACGG ATTTGACTAG GGCTGAGGAT AATTTGTTAA GGGCGATAAT TGACTATAAT CGTTCTTTGT CGGAACTGCA ACGAGCTGTG AGTAATCTTC CTGATGGGAG TTTGTCAAAT AATCCTTAA
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Protein sequence | MSVFRNILVV GVIGVVLSDG GESFSAPLPI HLQSNAPENS MLDPEEVKGK SVEVKETQGE ESDVSSLEKV TQLKPEGSLL KKLKSNYSGI KVPSNRYSEV NINKQLPKLK PNKERISALK ELENLYKNKD SLLAKLKFPI KEENISPSAL QFKQNINHNF AANKNQKIRI DSEKNVESLG KSNSSILELL ESKSENSEEN ISPSALQFKQ NINHNLAANK NQKIRIDSEK NVEILGKSNS SLLELLESKS GKLEVANQIN FSEEISFQES ITFSNNPERL SIDSENNVEN LGKSNSIFLE LLESKSGNLE VANQINFSEE ISFQESTNLL NHAEIFNLDL EKYQVENGKN QTDLKASTPE IKNQKNETNN SEKISERNPI LGNSYQVMTS INRAPTMATI NDLSEVETQA SVLNNPQKNK NNPIRLVGRT NNSLVSIIQR PPTFGNTSKQ QNSVQIKTGL NQTSTMNTVP NLARVENQKH LSNNSSLIIA QQNNESFPPP VPNGTLQTNP PPQIEPNSNP LYFPVTPDQV QIKETIPITL EEAIDLARRN NPDIQIVQLE VDRSKAALRE AQAALWPSLT FESVIERTES AFGDLQAQAQ KRVNKVTGRD ELIDTDIQNF PTTTFNNTFR FDYDLGLGKA RSSRIGVARE QIRLRELELE RFSEELRLNV SDDYYNLQQA DGRVKIGEAA VRNSRKSLED AEALERAGVG TRFDVLQAQV TLSNEQQSLT NALRDQRTTQ RRLAERLSAN ELINLTAADP IEPVGSWPLS LDETIVAAFR NRAELEQQLV QRDLSDEQRK LALSSVRPSL NFFATYNVLA LTTENQSWRA ARGWADGSTI GLRFRWNFFD GGAARASARQ SILNGEIAET RFEQVRNQIR REVEEAFFGL EASFENIDTA ELGVEQAKEA LRLARLRFQA GVGTQLEVIQ QETDLTRAED NLLRAIIDYN RSLSELQRAV SNLPDGSLSN NP
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