Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tery_4370 |
Symbol | |
ID | 4246023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Trichodesmium erythraeum IMS101 |
Kingdom | Bacteria |
Replicon accession | NC_008312 |
Strand | + |
Start bp | 6738117 |
End bp | 6738773 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638109258 |
Product | RNA polymerase sigma factor RpoE |
Protein accession | YP_723835 |
Protein GI | 113477774 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.338054 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0299236 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTCAAT ATATGTATGT ACCGTGGTCT AAGGTAGAAC AAACCCTTTC GCAAGTGGAA TTGCCACCAG AAAAACTCTC TAACTACGAT CTAGTATTGC GCTGCCAACA AGGTAGTCGC CCAGATCGTA CAACTTTTGC AGAACTTCTA CATCGATACC AACTCCATGT AGATAAAATC TTATATCACT TGGCCCCCGA ATGGCAAGAT AGATCTGATT TGGCCCAAGA GGTTTGGATC CGTGTATATC GTAATATTAG AGGCCTACAA GAACCAGCAA AATTTAAGAG CTGGCTCAGT CGGATAACAA CTAATCTATT TTATGACGAG TTACGGAAAC GAAAACGAAT TACCCCACCT CTATCGTTGG ACGCTCCTTT GACTTTAGAT GATGGTATAG TAGATTGGGA AATTGCTACA GATAAACCAG GACCAGAAGA ACAATTAACC ACACAAGAAT TTTACGATCA TCTTAGAGAT GCGATCGCTC AATTACCTGA AGTATTCAGA GTAACTATTA TCTTGAGAGA AATTCAGGGT TTATCATACG AAGAAATTTC AGAAATTACA GGAGTTTCTC TAGGAACTGT TAAATCAAGA ATTGCTAGAG CTAGACAAAG ATTACAATTG CAGCTCCAAA AATATTTAGA TATTTGA
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Protein sequence | MSQYMYVPWS KVEQTLSQVE LPPEKLSNYD LVLRCQQGSR PDRTTFAELL HRYQLHVDKI LYHLAPEWQD RSDLAQEVWI RVYRNIRGLQ EPAKFKSWLS RITTNLFYDE LRKRKRITPP LSLDAPLTLD DGIVDWEIAT DKPGPEEQLT TQEFYDHLRD AIAQLPEVFR VTIILREIQG LSYEEISEIT GVSLGTVKSR IARARQRLQL QLQKYLDI
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