| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_4180 |
|---|
| Symbol | |
|---|
| ID | 4245832 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 6441892 |
|---|
| End bp | 6443136 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 638109080 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_723658 |
|---|
| Protein GI | 113477597 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3772] Phage-related lysozyme (muraminidase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.988623 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCGGAA ATGGGTTTGC TGAGTTTAAC AATGTAGGAA CTGGCGCATT TCAAAGTAGT
ACCTTATTAA AAAAACTAAA TCAAGGAGAT TATCAAGGAG CAGCTAATGA ATTTTCTCGT
TGGGTAAATG GGGTGGTTAA TGGTGTCAAG CAATCACTAC CTGGTTTAGT ATCTCGTCGT
GCTGATGAAA AGAGGTTATT TCTTAAAGCT GGAGGAGAGA AAAAACCTTT AGAAGATGAA
ATTTCCAAAC AAGATAAAGT AACTTGGTTA GAAGGATATC GTGATGAAAA TAAGAAAACT
GTAGTTGTAG CTTGGAATGG GGGTAAAGTA GAAGAAATTT TAACTCTAGA AAAGTTTAAT
AAAGAGTTAT TGGCTAATGT TTTTCCTCAG TATAAAAATG CTAGGTATTA TGTCACTGCT
CCTGGTAATA AACGAATTCC TCCTGGTGAA AGAATTTCAG TTTTTGAAAT TTCGGATATA
TATAATTCTG ATAAACTTCC AAAACTCAAT CGTGTACTAG TGCGAGGGAG TGAAGGTAGT
GATGTGAAAA TTTTACAAGA GAGATTGAAG GATTTAGGTT ATTATCTAGG AGAACTTGAT
GCTATTTTTG GTAGGCAAAC TGAGCTTGCA GTTATTGATT TTAAAAAAGA TTATTTTGGA
ATCACAACAG ATAATGCAAC AGTAGAGTCC ATAACTTGGA AAAAATTATG GGGAGATCCT
CTACCTAAAC CTCCCGTCTT ACCACCCACG TCAAAGAAAA ATTATCTACT ATTAACAAAG
ACAAGTCGTA AAGATAGATA TGGATGTTAT GTACTTCACT TAGACTATTT TAAAAGTGGC
AAGCTAGAGG ACAGGTTAGA AGTTTGTTGC GGTGCCCCTG GAAGGCAATT TTTCCGTACC
GCTGCTCGGA GTCGGGCAAT GACTGGAGAA CCATTACCAG AGGGAAAGTG GTACATTAAT
GATATTATTT GGGCTGATGG TCAAGATAAT TATTATGGTC AAATTTTTCA AAGTGGTATT
GGCCCTGTAA CAGTTCCCTT AGACTATATA GAACCTGGCA CAACTGAAAG AAGCGCGATT
GAAATTCATA TTGACTGGAA TCGAAATTAT GGTTCTCCTG GTACTGTTGG TTGTATAGCT
ACTTACAACA TAGCTGATTA TAAAAGGTTT ATTACTTGGT TAAGGGATAC AGATCCACGG
GATCTTTATG TTGACTGGAA ATTAGGGACT TCTCCTAAAC CTTAG
|
|---|
| Protein sequence | MIGNGFAEFN NVGTGAFQSS TLLKKLNQGD YQGAANEFSR WVNGVVNGVK QSLPGLVSRR
ADEKRLFLKA GGEKKPLEDE ISKQDKVTWL EGYRDENKKT VVVAWNGGKV EEILTLEKFN
KELLANVFPQ YKNARYYVTA PGNKRIPPGE RISVFEISDI YNSDKLPKLN RVLVRGSEGS
DVKILQERLK DLGYYLGELD AIFGRQTELA VIDFKKDYFG ITTDNATVES ITWKKLWGDP
LPKPPVLPPT SKKNYLLLTK TSRKDRYGCY VLHLDYFKSG KLEDRLEVCC GAPGRQFFRT
AARSRAMTGE PLPEGKWYIN DIIWADGQDN YYGQIFQSGI GPVTVPLDYI EPGTTERSAI
EIHIDWNRNY GSPGTVGCIA TYNIADYKRF ITWLRDTDPR DLYVDWKLGT SPKP
|
|---|
| |