| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_4058 |
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| Symbol | |
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| ID | 4242086 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Trichodesmium erythraeum IMS101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008312 |
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| Strand | - |
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| Start bp | 6266294 |
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| End bp | 6267253 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 638108962 |
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| Product | RNA polymerase sigma factor SigD |
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| Protein accession | YP_723543 |
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| Protein GI | 113477482 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.284305 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0136203 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAGATTG GTAAAACCTC AGACATAGAT TCTGTATGCA CTTATCTAAG AGAAATTGGT
CGCGTTCCTC TATTAAGCCA CGAAGAAGAA ATTCTTTATG GAAAACAAGT TCAACGCTTA
ACGGCTTTGC AGGAATTTAA CCAAACGTTG GCAGAAGCTT TAGGCCGTGA ACCAACATTA
TTAGAATGGG CTGAGGCCAA GGAGCTGTCG AAGTCTGAAT TGCAGCGAAT TATTAGGGAA
GGCGAAAGAG CCAAGCGAAA AATGGTAGAG GCAAATTTGC GTTTGGTAGT ATCTGTTGCT
AAAAAATATA TCAAGCGAAA TGTAGATTTG CTTGATTTAA TTCAAGAAGG CACCATTGGT
ATGCAGCGAG GTGTAGAAAA GTTTGACCCG ACTAAGGGCT ATAGATTTTC TACTTATGCT
TATTGGTGGA TTCGTCAGGC TATAACCAGA GCAATAGCAG AAAAAGGCCG CACAATTCGT
TTACCTATCC ATATTACAGA AAAGCTAAAT AAGATTAAAA AAGTTCAGCG CCAACTGACT
CAACAGCTAG GACGTTCGGC TACTACTGGT GAAATAGCAG AAGAACTAGG TTTAACTCCA
AAACAAATAC GGGAATGCTT AGAACGGGCT CGCTTACCTT TATCTCTAGA TTTGCGAGTG
GGAGATAATC AAGATACAGA ATTAGGAGAC TTACTAGAAG ATACAGGAGC TTCTCCAGAA
GATTATGCTC TCCAATCTTC CATGCGAACT GATTTAGAAT CAATCATGGT TGACCTTACT
CCTCAACAAA AGCAAGTTTT GGCCTTAAGG TTTGGTTTAG AAGATGGCCA AACTATGACT
CTATCGAAAA TTGGTGCCCA CCTGAATATT AGTCGTGAAA GAGTACGGCA GATAGAGCGG
GAAGCTTTAA GTAAACTTCG TAAAAGAAAA CAAGATATGA ATGATTATTT AGCTAGTTAG
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| Protein sequence | MKIGKTSDID SVCTYLREIG RVPLLSHEEE ILYGKQVQRL TALQEFNQTL AEALGREPTL
LEWAEAKELS KSELQRIIRE GERAKRKMVE ANLRLVVSVA KKYIKRNVDL LDLIQEGTIG
MQRGVEKFDP TKGYRFSTYA YWWIRQAITR AIAEKGRTIR LPIHITEKLN KIKKVQRQLT
QQLGRSATTG EIAEELGLTP KQIRECLERA RLPLSLDLRV GDNQDTELGD LLEDTGASPE
DYALQSSMRT DLESIMVDLT PQQKQVLALR FGLEDGQTMT LSKIGAHLNI SRERVRQIER
EALSKLRKRK QDMNDYLAS
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