| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_3696 |
|---|
| Symbol | |
|---|
| ID | 4243871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 5676807 |
|---|
| End bp | 5678192 |
|---|
| Gene Length | 1386 bp |
|---|
| Protein Length | 461 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 638108642 |
|---|
| Product | O-antigen polymerase |
|---|
| Protein accession | YP_723229 |
|---|
| Protein GI | 113477168 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
|---|
| TIGRFAM ID | [TIGR00947] probable bicarbonate transporter, IctB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.312837 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTCAG TTTGGAAAAA GTTAACACTA ACTAATCTCT CATTCTCTGA CTCTGAATGG
TTAAATGCAA GCTATCTCTA TGGTTTACTT AATGGTTCCC TCTATAACTG GCGACGTGGT
AGTTGGTTAA TGCAATGGGG AGAACCTCTT GGTTTTGTGT TGCTAGCAAT TGTATTTACT
CTAGCTCCTT TTGTAAATAC TACTCTCATT GGTTTCTTAT TACTTGCTAG CGCTGGTTTT
TGGGTATTGC TGAAGGTCTC GGATAACACC CAGGAATATT TAACTCCTAT TCATCTATTA
ATATTCCTCT ACTGGAGTAT TGCGACATTG GCAGTGGTGA TATCTCCGGC AAAGACTGCT
GCTTTTAGTG GCTGGGTAAA GTTGACTCTT TATTTATTGT TGTTTGCTTC GGGGTCTTTG
GTATTAAGAT CCCCTAGACT CCGCTCTTGG TTAATCAATA TTTATTTGTT GGTTTCTCTA
GTTGTTAGTT TTTATGGTAT TCGCCAATGG ATAGATAAGG TTGAACCTCT GGCTACCTGG
AATGATCCTA CTTCTGCTCA AGCAGGTGCG ACTCGTGTTT ATAGTTATTT GGGAAATCCT
AATTTATTGG GTGGATATTT GTTGCCTGCT ATTGCTTTGA GTTTTGTGGC AATTTTTGCT
TGGAGTAGTT GGGCTCGAAA ATCTCTGGCA GTAACAATAT TGCTGGTGAG TTGTGCTTGT
TTGCGTTATA CAGGTAGTCG AGGTAGTTGG ATTGGGTTTT TAGCTTTGAT GTTTGCTATG
TTGATTTTAA TGTGGTATTG GTGGAGGAGC TATATGCCCA GTTTTTGGCA AATTTGGTCT
CTGCCTATAG CTGTGGGTAG TTTTGCCGGG TTGTTGATTT TAGCGGTGGT GTTGTTAGAA
CCTTTGCGCG ATCGCGTCCT GAGTGTTTTT GCGGGTCGTC AAGATAGCAG TAATAATTTT
CGGATGAATG TTTGGATGTC TGTTTTTGAT ATGATTCGCG ATCGCCCTAT TTTGGGTATT
GGACCGGGTA ATGATGTGTT TAATAAGATT TATCCTCTCT ATCAGCGTCC CCGTTATAGT
GCTTTGAGTT CTTATTCTGT GCCTTTGGAA ATTGTTGTGG AAACTGGTTT TATTGGTTTG
ACTGCTTTTT TGTGGTTGCT TTTGGTGACT TTTAATCAGG GTGTATTGCA GTTGAAACGT
TTGCGAGATG CTGATAACCC TCAAGGATAT TGGTTAATTG GTGCGATAGC TGCTATGGTG
GGCTTGATAG GTCATGGTTT GGTGGATACG GTCTGGTATC GTCCCCAAGT TAATACTATT
TGGTGGTTGA TGGTGGCTAT TATTGCTAGT TATAGCAGTC AACAGGGGGT ACGGAGTAGG
GAATAG
|
|---|
| Protein sequence | MNSVWKKLTL TNLSFSDSEW LNASYLYGLL NGSLYNWRRG SWLMQWGEPL GFVLLAIVFT
LAPFVNTTLI GFLLLASAGF WVLLKVSDNT QEYLTPIHLL IFLYWSIATL AVVISPAKTA
AFSGWVKLTL YLLLFASGSL VLRSPRLRSW LINIYLLVSL VVSFYGIRQW IDKVEPLATW
NDPTSAQAGA TRVYSYLGNP NLLGGYLLPA IALSFVAIFA WSSWARKSLA VTILLVSCAC
LRYTGSRGSW IGFLALMFAM LILMWYWWRS YMPSFWQIWS LPIAVGSFAG LLILAVVLLE
PLRDRVLSVF AGRQDSSNNF RMNVWMSVFD MIRDRPILGI GPGNDVFNKI YPLYQRPRYS
ALSSYSVPLE IVVETGFIGL TAFLWLLLVT FNQGVLQLKR LRDADNPQGY WLIGAIAAMV
GLIGHGLVDT VWYRPQVNTI WWLMVAIIAS YSSQQGVRSR E
|
|---|
| |