| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_3408 |
|---|
| Symbol | |
|---|
| ID | 4244445 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 5218020 |
|---|
| End bp | 5219663 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638108392 |
|---|
| Product | Na-Ca exchanger/integrin-beta4 |
|---|
| Protein accession | YP_722982 |
|---|
| Protein GI | 113476921 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.230394 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCAA TAATTGGTAC TACAGAGTCC GAAAAACTAA TTGGTAGTCG AGATAGGGAA
AAAATATTTG GCTTGGATGG TGATGACACC TTAGAAGGTC GTCAGGGTTT TGACCATCTC
TTTGGCGGAG ATGGTAATGA TGTCTTAATA GGTGGTCAAG GTCGCGATCG CTTCAATGGG
GGTAGAGGAA ATGATACCCT CACTGGTAAT GCCAGTAAAG ACTTTTTTAT CTTTGATGCT
AAAGAAGATA TTGATTTTCA GGCCCTTGGT GTCGATACAA TTACAGATTT TGTTCCCGAT
CAAGATACAA TTATCCTTGC TAAAAGAAAA TTTACAAAAA TTTCCAGTGA TGCTGGAAGT
GGGTTTAGTA TTGACAATGA ATTTGACACT GTGACCGATA ATGCTGCAAC TTCTGACGCT
ATAATTGTCT ACGATAGCAC GACTGGTCAG CTATTCTATA ATGCTAATGG TAGTGAAGAA
GGTTTTGGAG ATGGCGGTCA ATTTGCAATT CTTGAAAATC TACCAGACCT AAAAGCTGAA
GACTTCAAAT TAAGAGCTCA TCCTACAGCA GAACCAGAAC CAGAACCAGA ACCAGAATTT
GAAGTTTCTA TCGACAAAGT TAGTGTAGTT GAAGGGGATG CCGGGACTAC AGACGCAACT
TTTACCGTTA ATCTCAATGA TCCTAGTGAA CAGACTATTG AAGTTGCTTA TGATACAGAC
CCTAGTGGTA TCTTTAAACT AGCAGTTGTT ATACCTGATG AAGCTATAGC AGGGCAAGAT
TATGAAGTTA CCAGAGGTGT GTTAACATTT AATCCTGGTG AAACAACAAA AACTTTTACA
GTACCTATTA TTGGTGATAC ACAGCAAGAG TTAGATGAAT TTTTCACTGT TTATCTACTG
GACCCTACTA CTATCAACAC CGATAGTCCT AACATATTAA CAACAACAAA AGGGATAATT
GAAAATGATG ATGCTGAGAT TACAAATAAT GTAATTAAAT TTACTCCCTC AAGTACAGAA
GAAGAGATAA AAGCTCAAAA TGGACCTAGT ATTGAGCTCG TCGACGGCCA AACTATTTAT
ATTGGTACTT GGCAAAGAAC GGTTAACAAC CAAGATCCCA TTATTGCTAG CTTCGATCCA
ATAAACCCCA CTAATAACTG GGTGCGAACA GATTATGAAA CCACTGGAGC AGACGGTAGA
GGTCGTGGTT TATTCTGGGA TGGAGAGGAC TTATATGCAG TTTTTAGCGT TGACGGTACT
CAGGGAACTC CAGAACAGGA CTTTCGCCGT GCTGCTACTG ATGCTGTACA GCCTTGGCTA
CGCAGTTATG GTCAAGGTGG TGGTGCAAGT GTAAGTGTTG TTGCCAGGAT AGATATAGAT
GATTTAACTA ACCCAGGAGA AATGACAGAT GCAGCATATT TTACAGCACT TTTGAGCAAT
GGTAATAGTA ATACATTGAA AGTTACTGAT CTATCTATTA ATTCTGATAA TAATCTAATT
GTAGAAGCTG ACTCTTTCTT TTCACCGCGC AACCCTGATG GTAGTCGGAT TGAAATACCA
TCTGGTTTGT CTTCACCATT TGATTATAGA TTAGTAATTA CACCTGACTT AAATGAAGTT
CTTGACAGTG AAGTTATTTT TTAG
|
|---|
| Protein sequence | MKPIIGTTES EKLIGSRDRE KIFGLDGDDT LEGRQGFDHL FGGDGNDVLI GGQGRDRFNG
GRGNDTLTGN ASKDFFIFDA KEDIDFQALG VDTITDFVPD QDTIILAKRK FTKISSDAGS
GFSIDNEFDT VTDNAATSDA IIVYDSTTGQ LFYNANGSEE GFGDGGQFAI LENLPDLKAE
DFKLRAHPTA EPEPEPEPEF EVSIDKVSVV EGDAGTTDAT FTVNLNDPSE QTIEVAYDTD
PSGIFKLAVV IPDEAIAGQD YEVTRGVLTF NPGETTKTFT VPIIGDTQQE LDEFFTVYLL
DPTTINTDSP NILTTTKGII ENDDAEITNN VIKFTPSSTE EEIKAQNGPS IELVDGQTIY
IGTWQRTVNN QDPIIASFDP INPTNNWVRT DYETTGADGR GRGLFWDGED LYAVFSVDGT
QGTPEQDFRR AATDAVQPWL RSYGQGGGAS VSVVARIDID DLTNPGEMTD AAYFTALLSN
GNSNTLKVTD LSINSDNNLI VEADSFFSPR NPDGSRIEIP SGLSSPFDYR LVITPDLNEV
LDSEVIF
|
|---|
| |