| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_3318 |
|---|
| Symbol | lpxC |
|---|
| ID | 4243489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 5092619 |
|---|
| End bp | 5093524 |
|---|
| Gene Length | 906 bp |
|---|
| Protein Length | 301 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 638108303 |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
|---|
| Protein accession | YP_722894 |
|---|
| Protein GI | 113476833 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
|---|
| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATGA ATTATCAATA TACTTTAGGA GGGGAATTTT CGCGGTCGGG AGTGGGTTTA
CATAGTGGTA TAAAATCTCA TGTTAAAATT ATGTCTGCTC CTCAAAATAC AGGCAGATAT
TTTGTTAGAA TTGACTTACC TAATTATCCA GTAATTCCAG CTATAGTTTC TTCTGTTATT
TCTACTACTC TCTCTACAGA ACTAGGTACT AGAGATATTC GTATCCGTAC TGTAGAACAT
CTATTAGCTG CTTTGGCAGG AATGGGTATA GATAATGCTC GAATAGAAAT TGATAGCCCT
GAAATTCCCT TGTTAGATGG TTCAGCTAAA GTCTGGACAG AGGCGATCGC TTCTATAGGA
TTAGTAAAAG CAAAGGGGGT AGATGAGGAG GTTGGGAAAT GGAGAGATGA AACTATAGAA
ATTAATAATA CTCACCTCCA ACAACTCAAA GCCCATAAAC TACCTGTGAT TTCTCAACCA
GTCTGGATAT ATCAGGGGGA TAGTTTTGTT GCTGCTTTAC CGAGTCTTGA AACTCGCTTT
ACTTATGGGA TAGATTTTGA TTTACCAGCG ATCGGTAATC AATGGTATAG TTGGTCTCCA
CAAACAGAAA GTTTCACTGA TTCTATTGCC CCGGCTCGGA CATTTGGTTT ATCATATCAG
ATTGACCAAT TGCGAGAAGC TGGTTTGATC AAAGGTGGTA GTTTAGATAA TGCTCTAGTT
TGTAGTGAAA CTGGATGGTT AAATCCACCC TTAAGATTTA CAAATGAACC AGTGCGTCAT
AAAATTTTAG ATTTAATTGG AGATTTGAGT TTACTGGGAA GTTTTCCTCA GGCTCATTAT
TTTGCTTACA AAGCTAGTCA TAAGTTGCAT ATCCAGTTAG CTCAAAAAAT TTTAGAGTTA
AACTAA
|
|---|
| Protein sequence | MNMNYQYTLG GEFSRSGVGL HSGIKSHVKI MSAPQNTGRY FVRIDLPNYP VIPAIVSSVI
STTLSTELGT RDIRIRTVEH LLAALAGMGI DNARIEIDSP EIPLLDGSAK VWTEAIASIG
LVKAKGVDEE VGKWRDETIE INNTHLQQLK AHKLPVISQP VWIYQGDSFV AALPSLETRF
TYGIDFDLPA IGNQWYSWSP QTESFTDSIA PARTFGLSYQ IDQLREAGLI KGGSLDNALV
CSETGWLNPP LRFTNEPVRH KILDLIGDLS LLGSFPQAHY FAYKASHKLH IQLAQKILEL
N
|
|---|
| |