| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_3212 |
|---|
| Symbol | |
|---|
| ID | 4243807 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 4910934 |
|---|
| End bp | 4912403 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 638108213 |
|---|
| Product | carotenoid oxygenase |
|---|
| Protein accession | YP_722804 |
|---|
| Protein GI | 113476743 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.415925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.375816 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAATT TACAAATTCA ACAACCTAAA TCTTATACTA GTAAAGATTG GCAACAAGGA
TATAAATCTC AACCACAAGA ATATAACTAT TGGATTGATG ATATAGAAGG TGAAATACCA
GAAGATTTAA ACGGTACTTT TTTCCGTAAC GGACCAGGTT TATTAGACAT TAATGGTCAA
CTTATTGCTC ATCCTTTTGA CGGAGATGGA ATGGTTTGTG CAATTAGTTT TAAAAACCGT
CGCGCCCACT TCCAAAATAG ATTTGTTAGA ACAGAAGGTT ATGTGGCAGA AAAAGCGGCA
GGAAAAATTC TCTATAGAGG TGTTTTTGGT ACTCAAAAAA CAGGTGGTTG GTTAGCTAAT
CTTTTTGATT TTAAACTTAA AAATATTGCC AATACTGGTA TTATTTATTG GGGTGATAAA
CTTTTGGCAT TGTGGGAAGG AGGGCAACCT CATCGTTTAA ATCCCCAGAA TTTAGAAACC
ATTGGCCTTA ACGATTTAGA TGGGCTTTTA CAACCAGGTC AAGCTTTTTC TGCTCATCCC
AGAATTGATA AAGGAAAGGA TGGAAAAGGA GATGTTTTAG TTAATTTTTC TGTCAAACCT
GGTTTATCAA GTACCATTAC TATTTTTGAA TTTAATAGTC AGGGAAAATT ACTCAAACGT
TACTCTAATT CTATTCCTGG TTTTGCCTTT TTACACGATA TGGTAATTAC ACCAAATTAC
TGTATTTTTT TTCAAAATCC TGTTGCTTTT AATCCTTTTC CTTTATTACT AGGGTTACGA
ACTCCAGGTC AATGTTTAGA GTTTTTACCT AATAATTCAA CACAAGTTAT TTTAATTCCT
CGTGATGGTA GTAAAGCTAT AAAAATTTTG AAAACGAAAC CTTGTTTTGT ATTTCATCAT
GCTAATGCTT GGGAAAAGGA CGGGGAAATT TATGTAGATT CTATTTGTTA TGAATCTGTC
TCACAAACTG ACCTAGGTGA TAATTTTCTG GAGGTGGATT TTGACTCAAT GACAGAAGGT
AAGTTATGGC GATTTAAGAT TAATTTATCA GAGAATAATG TGGAACATAA ATTGCTTGAA
AGTCGTTGTT GTGAGTTTCC GACTTTAAAT CCGAATAATG TAGGAAAAGC TTATCGATAT
TTATTTATTG GAGCAGCAGA TAAGCCTAGT GGAAATGCTC CTTTACAAGC AATATTAAAA
ATTGATTTGC ATACAGGAAA ACGTCAAACT TTTAGTGTCG CACCGCGAGG TTTTGCAGGA
GAACCTTTAT TTGTTCCTTT TCCAAATGGG GTGAATGAGG ATGATGGTTG GTTATTAATG
TTGATGTATG ATGCAGCAGA ACATCGGTCG GATATTGTGA TTTTGGATGC TCGTGATTTG
AATAAAAAAC CTGTGGCAAG ATTACATTTA AAGCATCATA TTCCTTATGG TTTACATGGT
AGTTTTACCC CTAATTATTT TCAAGAGTAA
|
|---|
| Protein sequence | MTNLQIQQPK SYTSKDWQQG YKSQPQEYNY WIDDIEGEIP EDLNGTFFRN GPGLLDINGQ
LIAHPFDGDG MVCAISFKNR RAHFQNRFVR TEGYVAEKAA GKILYRGVFG TQKTGGWLAN
LFDFKLKNIA NTGIIYWGDK LLALWEGGQP HRLNPQNLET IGLNDLDGLL QPGQAFSAHP
RIDKGKDGKG DVLVNFSVKP GLSSTITIFE FNSQGKLLKR YSNSIPGFAF LHDMVITPNY
CIFFQNPVAF NPFPLLLGLR TPGQCLEFLP NNSTQVILIP RDGSKAIKIL KTKPCFVFHH
ANAWEKDGEI YVDSICYESV SQTDLGDNFL EVDFDSMTEG KLWRFKINLS ENNVEHKLLE
SRCCEFPTLN PNNVGKAYRY LFIGAADKPS GNAPLQAILK IDLHTGKRQT FSVAPRGFAG
EPLFVPFPNG VNEDDGWLLM LMYDAAEHRS DIVILDARDL NKKPVARLHL KHHIPYGLHG
SFTPNYFQE
|
|---|
| |