| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_3042 |
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| Symbol | |
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| ID | 4244692 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Trichodesmium erythraeum IMS101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008312 |
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| Strand | + |
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| Start bp | 4694429 |
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| End bp | 4696336 |
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| Gene Length | 1908 bp |
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| Protein Length | 635 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638108072 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_722665 |
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| Protein GI | 113476604 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00899541 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCATCTAA GCGAAATTAC TCATCCTAAA CAGTTACACA ATCTTTCAAT TCATCAACTA
GAAGAAATTG CTAGACAAAT ACGAGAGAAA CATCTAGAAA CAGTTGCCAC AAGTGGAGGC
CATCTAGGTC CAGGGTTAGG AGTTGTAGAG CTGACATTAG GTCTCTACCA AACTCTCAAT
CTAGATCGGG ACAAAGTTAT TTGGGATGTA GGCCATCAAG CTTATCCTCA TAAAATTATC
ACAGGTCGAT ATCACAATTT CCATACTTTG CGACAAAAAG ATGGTATTGC AGGTTATTTA
AAACGATGTG AAAGTAAATT CGACCATTTT GGTGCTGGTC ATGCCTCTAC AAGTATCTCT
GCTGGTTTGG GGATGGCCTT AGCCAGAGAT ATGAAAGGAG ATAACTTTAA AGTAGTTTCC
ATTATTGGGG ATGGTGCTTT AACTGGTGGT ATGGCTTTAG AAGCCATTAA CCATGCAGGT
CACTTACCCA AAACTAACAT ACTAGTTGTG TTAAACGATA ACGAGATGTC CATTTCTCCT
AACGTAGGTG CAATTTCTCG CTATCTCAAC AAAATGCGCT TATCCCCACC GATACAGTTT
CTTCAGGATA ACTTAGAAGA ACAATTCAAA CAGATTCCTT TTGTTGGTGA AACCTTTACA
CCAGAAATGG AAGGCCTCAA AGGAGGAATG AAGCGTTTAG CAGTGTCAAA AGTGGGGGCT
GTAATTGAAG AATTGGGCTT TACCTATATG GGTCCTGTTG ATGGGCATAA TTTAGAAGAA
TTAATTACAA CTTTCAACCA AGCTCATCAA ATTCCCGGAC CAGTATTAGT TCATGTTGCC
ACAACTAAGG GTAAAGGATA CCCAGTTGCT GAAGAGGATA AAGTTAGTTA TCATGCTCAA
AATCCCTTTA ATTTGGCCAC GGGTAAAGCT TTACCAGCAA GTAAGCCAAA GCCTCCTAAA
TACTCTAAAG TTTTTGCCCA TACTTTGGTG AAACTTGCGG AAAATAACCC CAAAATTATT
GGTATTACTG CTGCTATGGC AACTGGCACA GGTTTAGATA AACTTCATGG GAAACTGCCA
AAACAATATA TAGATGTTGG TATTGCAGAA CAACATGCTG TGACTTTGGC AGCAGGTTTA
GCTTCTGAAG GAATGCGACC AGTGGTTTGT ATTTATTCAA CTTTCTTGCA ACGAGCTTAT
GACCAAATTA TCCATGATGT CTGTATTCAA AAGTTACCTG TATTCTTCTG TTTAGACCGT
GCTGGTATTG TAGGTGCAGA TGGTCCGACT CACCAGGGAA TGTATGATAT TGCTTATTTA
CGTTGTATCC CAAATATGGT AGTTATGGCG CCTAAGGATG AGGGTGAGTT ACAACGGATG
GTGTTGACTG GTATTAAACA TACGGATGGG GCGATCGCTA TGCGTTATCC TCGTGGTAAT
GGTTATGGTG TGCCTCTGAT GGAAGAGGGT TGGGAAGCTA TTACTATTGG TAAGGGTGAG
ATTCTGCGGA ATGGTGATGA TGTGCTGATA TTAGGTTATG GGTCTATGGT CTATTCGGCT
ATGCAAACAG CAGAAATTCT CAGCGAGCAT GGTGTTGCTG CTACTGTCGT AAATGCTCGT
TTTGTCAAGC CTTTGGATAC AGAATTAATT CTACCTTTGG CACAACGCAT TGGTCAGGTT
GTGACTATGG AGGAAGGTTG TTTGATGGGT GGTTTTGGTT CGGCAGTTAC GGAAGCATTG
ATGGATAATA ATGTACTTGT ACCTGTTTTA CGTTTGGGTG TACCTGATAA GTTGGTGGAT
CATGCTAAAC CTGATGAGTC GAAGGCTGAT TTGGGTTTGA CTCCTTCTCA AATGGCAGAA
CGTATTTTGC AGAGTTTTAA GCCTAGGTTA TCGACTATTA ATGTTTAA
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| Protein sequence | MHLSEITHPK QLHNLSIHQL EEIARQIREK HLETVATSGG HLGPGLGVVE LTLGLYQTLN
LDRDKVIWDV GHQAYPHKII TGRYHNFHTL RQKDGIAGYL KRCESKFDHF GAGHASTSIS
AGLGMALARD MKGDNFKVVS IIGDGALTGG MALEAINHAG HLPKTNILVV LNDNEMSISP
NVGAISRYLN KMRLSPPIQF LQDNLEEQFK QIPFVGETFT PEMEGLKGGM KRLAVSKVGA
VIEELGFTYM GPVDGHNLEE LITTFNQAHQ IPGPVLVHVA TTKGKGYPVA EEDKVSYHAQ
NPFNLATGKA LPASKPKPPK YSKVFAHTLV KLAENNPKII GITAAMATGT GLDKLHGKLP
KQYIDVGIAE QHAVTLAAGL ASEGMRPVVC IYSTFLQRAY DQIIHDVCIQ KLPVFFCLDR
AGIVGADGPT HQGMYDIAYL RCIPNMVVMA PKDEGELQRM VLTGIKHTDG AIAMRYPRGN
GYGVPLMEEG WEAITIGKGE ILRNGDDVLI LGYGSMVYSA MQTAEILSEH GVAATVVNAR
FVKPLDTELI LPLAQRIGQV VTMEEGCLMG GFGSAVTEAL MDNNVLVPVL RLGVPDKLVD
HAKPDESKAD LGLTPSQMAE RILQSFKPRL STINV
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