| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_2996 |
|---|
| Symbol | rpsE |
|---|
| ID | 4245112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 4649758 |
|---|
| End bp | 4650291 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638108031 |
|---|
| Product | 30S ribosomal protein S5 |
|---|
| Protein accession | YP_722624 |
|---|
| Protein GI | 113476563 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0098] Ribosomal protein S5 |
|---|
| TIGRFAM ID | [TIGR01021] ribosomal protein S5, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.37992 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0218882 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAC AGCAACAACG TAGGAAAAAA AGTAGCCGTA CCAAAGAAAA AGAAATTGAA
TGGCAAGAAA GAGTTGTCCA AATTCGCCGA GTCACCAAAG TTGTAAAAGG TGGTAAAAAC
CTCAGTTTTC GCGCTATTGT CGTAATAGGC AATGAGCGGG GTCAAGTGGG TGTAGGAGTG
GGTAAGGCAG CAGATGTTAT AGGAGCTGTA AGGAAAGGAG TTGCTGATGG TAAAAAACAT
ATCATAGAAG TCCCACTGAC TAAATCTAAC TCTATTCCTC ACCCTGTAAA TGGTTTTGGT
GGTGGAGCTA AAGTAATGAT GCGACCTGCG GCACCAGGTA CAGGAGTTAT TGCGGGAGGA
GCTGTAAGAA CTGTTCTTGA ACTGGCAGGT GTGCAAAATA TACTAGCAAA ACAGTTAGGT
TCTAATAATC CATTAAACAA TGCGAGAGCT GCTGTTAACG CTTTAGATGC TTTGAGAACA
TTAGCAGATG TAGCTCAAGA GCGAGAGGTA CCCATAGAAA ATTTATATGT TTAG
|
|---|
| Protein sequence | MAEQQQRRKK SSRTKEKEIE WQERVVQIRR VTKVVKGGKN LSFRAIVVIG NERGQVGVGV
GKAADVIGAV RKGVADGKKH IIEVPLTKSN SIPHPVNGFG GGAKVMMRPA APGTGVIAGG
AVRTVLELAG VQNILAKQLG SNNPLNNARA AVNALDALRT LADVAQEREV PIENLYV
|
|---|
| |