| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_2653 |
|---|
| Symbol | |
|---|
| ID | 4245378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 4110199 |
|---|
| End bp | 4112451 |
|---|
| Gene Length | 2253 bp |
|---|
| Protein Length | 750 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638107721 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_722320 |
|---|
| Protein GI | 113476259 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.552873 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACAA AAACCGTCAC ACCGAAAGCT CAAATTTCAT GTGTAATTCC TGATTGGTTG
CAAGAATGTC TAGATAACAG AAATAAGGGC AATAATGTTA CTAGTTGTTC AGTGGATACA
GCATTAATTT GTCGAGCATT TGAATTTGCA TATAAGTTAC ATGAAGGGCA GTATAGAAAA
TCAGGAGAAC CTTATATTTG TCATCCTGTA GCCGTAGCAG GATTATTAAA ATATTTAGGT
GGTGATAGTA CCATGATTGC TGCAGGTTTG CTACATGATA TTGTTGAAGA TACTGACGTA
AAAATTGAAG AAATAGAGGA AAAATTTGGT TCAGAAGTAA CTTTATTAGT AGAAGGTGTA
ACTAAACTTT CTAAGTTTAA TTTTTCTAAT AAAACAGAGC TACAAGCTGA AAATTTTCGC
CGAATGTTTT TGGCAATGGC AAAAGATATT AGAGTCATTG TTGTCAAGTT GGCAGACAGA
TTACATAATA TGAGAACTCT CCAACATTTA CCTTCTCATA AACAGTTAAG TAAAGCATTA
GAAACACGGG AAATATTTGC ACCACTGGCA AATCGTTTAG GAATTGGTAG GATTAAATGG
GAATTAGAAG ATTTATCTTT CAAATATCTT GAACCAAATG CTTATCGTGA AATTCAAGAG
TTGGTAGCAG ATAAAAGGGT AGATAGGGAA GCTAGATTAT TAAAAATGAC AGAAAATTTA
CGACAAAAAT TAGACCGCTT AGGAATAGAA TGTTACGACA TTAGTGGTCG CCCTAAACAT
CTTTATGGAA TTTATCGAAA GATGTACTTA AAACAAAAAG AATTTCACGA AGTATATGAT
ATTTCTGGAC TGAGAATTAT TGTAGAAAAA AGAGAAGATT GTTATCGAAC TTTAGCTATT
GTTCATGACT CTTATCGTCC TATTCCTGGA AGATTTAAAG ACTATATTGG TCTGCCAAAA
CCTAATCGTT ATCAGTCGTT ACATACAGGA GTAATAGGTA TTACAGGTCG TCCGGTAGAG
GTGCAAATTA GAACTGTGGA AATGCACCAT GTTGCTGAGT ATGGAATAGC TGCTCATTGG
AAGTATAAAG AGACTGGTTA TAGTAATACT AATGTTAATA TTACGACAGA AGATGAAAAG
TTTACTTGGC TTAGACAGTT ATTAGAATGG CAAAGTGACC TGAAAGATGA TCGGGAATAT
TTGGAAACTA TTAAGGGTGA TTTATTCTCT GAAGATGTTT ATGCATTTAC ACCAAAAGGT
GATGTTATTT CCCTCAAACA TGGATCGACA CCAATAGATT TCGCTTATCG TATTCATACA
GAGGTAGGAA ATCATTGTAC AGGTGCTAAG GTAAATGAAC GAATAGTACC TTTAGATACT
CCTTTAAAAA ATGGTGATAT TGTCGAAATT TTAACTCATA AAAATGGCCA TCCTAGCTTA
GATTGGCTAA ATTCTGTGGT TACTGGTGGA GCACGAAATC GAATTCGTCA GTGGTATAAG
CGTTCCCATA GAGAAGAAAT TTTAGCTAGA GGTCGAGAAT TATTAGAAAA AGAATTGGGT
AAAAAAGGTT TTGAATCTTT ACTCAAATCT GAGCAAATGC GACTTGTTTC TGAAAAATTT
AATTATCATA ATGTAGATGA TTTATTGGCT GGTTTGGGAT ATGGTGAAAT AACTTTAAAT
TTAGTGGTCA ATCGATTGCG AGATGCTTTT AGAGAAGTCA CAAAAGTTGA GGAAAATTCA
GATATTTGTT CAGAAAAATA TTTACACAAG TCTACTCAAA TTTCGTCTCC TAATAATTAT
CATCCAATCG CTGGAGTTGA AGGGTTAATG TATCATTTAG CAGGTTGTTG TAATCCGATT
CCAGGTGAGC CTATTATTGG AGCTGTAACT CGTATAAATG GTATTTCTAT TCATCGTCAA
GGTTGTTCTA ATATAGAAAA TGTACCTGGA GAAAGGTTAG TTCCTGTTAG TTGGAATAAT
GCTAATGAAA ATAATGGAAG ACCGAAAACT TATCCAGTTA ATATCTATAT TGAAGTTATA
GATAGAGTGG GTGTTCTCAA AGATATTTTA TCCCGTTTGA TGGATAATAA TGTTAATGTT
AAAAATGCTC AGGTTAAAAC AAATCCTGGT CATACTGCTA TTATTAATCT ATGTATTGAA
GTGAGCGACT GCCAACAATT TGAACGTAGT TGTACTCAGA TTAAAAATAT AAGTGATATT
TTGAATTTAC GTCGTGTTAG TCAGGTTGAA TAG
|
|---|
| Protein sequence | MKTKTVTPKA QISCVIPDWL QECLDNRNKG NNVTSCSVDT ALICRAFEFA YKLHEGQYRK
SGEPYICHPV AVAGLLKYLG GDSTMIAAGL LHDIVEDTDV KIEEIEEKFG SEVTLLVEGV
TKLSKFNFSN KTELQAENFR RMFLAMAKDI RVIVVKLADR LHNMRTLQHL PSHKQLSKAL
ETREIFAPLA NRLGIGRIKW ELEDLSFKYL EPNAYREIQE LVADKRVDRE ARLLKMTENL
RQKLDRLGIE CYDISGRPKH LYGIYRKMYL KQKEFHEVYD ISGLRIIVEK REDCYRTLAI
VHDSYRPIPG RFKDYIGLPK PNRYQSLHTG VIGITGRPVE VQIRTVEMHH VAEYGIAAHW
KYKETGYSNT NVNITTEDEK FTWLRQLLEW QSDLKDDREY LETIKGDLFS EDVYAFTPKG
DVISLKHGST PIDFAYRIHT EVGNHCTGAK VNERIVPLDT PLKNGDIVEI LTHKNGHPSL
DWLNSVVTGG ARNRIRQWYK RSHREEILAR GRELLEKELG KKGFESLLKS EQMRLVSEKF
NYHNVDDLLA GLGYGEITLN LVVNRLRDAF REVTKVEENS DICSEKYLHK STQISSPNNY
HPIAGVEGLM YHLAGCCNPI PGEPIIGAVT RINGISIHRQ GCSNIENVPG ERLVPVSWNN
ANENNGRPKT YPVNIYIEVI DRVGVLKDIL SRLMDNNVNV KNAQVKTNPG HTAIINLCIE
VSDCQQFERS CTQIKNISDI LNLRRVSQVE
|
|---|
| |