| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_2553 |
|---|
| Symbol | |
|---|
| ID | 4244855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 3936845 |
|---|
| End bp | 3938164 |
|---|
| Gene Length | 1320 bp |
|---|
| Protein Length | 439 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638107628 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_722227 |
|---|
| Protein GI | 113476166 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAACA GATACAATAG AACTGCAAAT ATTGACCGGC TATTTTGGCA AGAGTGGCAA
AAGCATCAAG ACTATCTCTA CCATTGCTGT GTCAAATGGA TGGGAGGTAA TTCTATAAAT
GCTGAGGATG CTCTGAGTAT GGCTATGTTG AAGGCTAGGG AAAAAGTACA AAAGTGTCAC
AAAACAATTG ATAACTTCAA AGCTTGGTTG GCAAAACTCA CCTATAACCT TTGTATGGAT
CTACTGAAGC AGTCTGCTCG CTATCATCAA AAGGTTGAGG ATCTAGACTT GGTTCTATCT
CGCGCTGATG GGAGGACTCA AAGAGGAGAT CCATTTTTTG CTGTTGCCTA CGGAGAGTTA
GAAGATTTTT GTCGCTTGGC TATTGACAAT TTGCCAAAGA GACTACGGGA AACTTTTGCT
CTCTTTTTTA AAGAATACTC TTATAAGGAA ATAGCTACAG AGTTAAGTAT TTCTGAGCCT
AATGTCCGTA AGCGTATTTC CCAGGGGCGG GCTATTTTGC GAGAAAGGTA TGAGGAATAC
CAGAAACAAA AAGAAATAGT TATTTTTGAG GAGCACAAAG TAGAAAATTC TCCAGCTCAA
GAGTTGGAAA CAGAAATTAT TGCTACTGAG ATGCCCCAAG AGGCTGTTTT ATCTGAAGAG
AAAAGTGAGC CTATTTTAGT AGAGGCAACG GCTGAGAAGG AGTTAGGGAA AATAGAGACT
GTTGGCTATA GGAAACAAGA GCTTGTTGCT CCATCAGTGT TAGTGAAATC ACTTAGGGAC
GCTAAGAAAA AGCACTTAGT AGAGGCAACG GCTGAGGAGG AGTTAGGGAA AATAGAGACT
GTTGGCTATA GGAAACAAGA GCTTGTTGCT CCATCAGTGT TAGTGAAATC ACTTAGGGAC
GCTAAGAAAA AGCACTTAGT AGAGGCAACG GCTGAGGAGG AGTTAGGGAA AATAGAGACT
GTTGGCTATA GGAAACAAGA GCTTGTTGCT CCATCAGTGT TAGTGAAATC ATTTAAGTAT
GCTAATAAAA GGTACAAAGA TAAGACACAA CACAAATGTG GTCTACTGAG TACATGCACA
AATATAGTAC CGGTATTGCT GAGGGGCAGG ATGAATATAA GTATAGTCGG CTTCCTGCTA
GCCCAACAAT ATAAGGAACC GGCCAGGGGG TTAATCCACA AAGGTCTAGA AGACATAACA
CATTTATACA ACTTTGGCAA CAGAAAAATA AAAGCTTTAG ACAAACAGTT TAATTGGTTA
GCAGCGGATA ATTTGCTAAG GCTTTCAGCA GAGAAACTGA GGTACAAATT CTGCTGTTAG
|
|---|
| Protein sequence | MLNRYNRTAN IDRLFWQEWQ KHQDYLYHCC VKWMGGNSIN AEDALSMAML KAREKVQKCH
KTIDNFKAWL AKLTYNLCMD LLKQSARYHQ KVEDLDLVLS RADGRTQRGD PFFAVAYGEL
EDFCRLAIDN LPKRLRETFA LFFKEYSYKE IATELSISEP NVRKRISQGR AILRERYEEY
QKQKEIVIFE EHKVENSPAQ ELETEIIATE MPQEAVLSEE KSEPILVEAT AEKELGKIET
VGYRKQELVA PSVLVKSLRD AKKKHLVEAT AEEELGKIET VGYRKQELVA PSVLVKSLRD
AKKKHLVEAT AEEELGKIET VGYRKQELVA PSVLVKSFKY ANKRYKDKTQ HKCGLLSTCT
NIVPVLLRGR MNISIVGFLL AQQYKEPARG LIHKGLEDIT HLYNFGNRKI KALDKQFNWL
AADNLLRLSA EKLRYKFCC
|
|---|
| |