| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_2383 |
|---|
| Symbol | |
|---|
| ID | 4245031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 3680800 |
|---|
| End bp | 3685065 |
|---|
| Gene Length | 4266 bp |
|---|
| Protein Length | 1421 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638107476 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_722076 |
|---|
| Protein GI | 113476015 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.823331 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTAC CTGCAGTTTT ACACCCCGAT ATAGTTGAGT TTCTCCGAAA AGAAATAGGA
AGTAATTTGC AAAAGAGAGT ATGGGAATGT ATTCAAACAC TGAAACAGCA AAAATTTAAT
AGTGGGTTGC GGGTAAAAAA GCTGAAAGGA ATAAACAAAA GAGTATGGGA AGCTAGAATT
AATAGTGCTA GTCGCTTAAT TTTCACCTAC GATAAATCAC AAAGGCCAGA AACAGGAAAA
GCGCAAGTTT ATCTAGCAAT TCAAGATATT TGTGTAGATC ATGATGATGT ATCCCGACGT
GCTAAAGCTA GGAAAAACAG ACCTGATGCT GAATGGTTAG AAACACCAGA ATTTGAAGTT
ATTCTGGAAA CGAACAATTT CAAAAACCAG GATAATAATA TAGATAAAAA TATATTATAT
TCATCAGTAG AAAAAGCAAA TATTGAAGCT ATGAAAGCTT TAGACTTAGA AACAAACTCA
GATTTAACAG ATGATGAATT GTTAGGAAAT ATTCAGTGGC GAGTATTAGA GTCAGAAACA
GAATGGCAAA AAGCAATTAT TGAGCAAAAT ACAGATTTAC CTTTAAAGCT GACTCCAGAA
GAATATAAAT TAGCTAAATT GTCAGGAAAT CTATTATTAA GTGGTAGTGC AGGCACAGGA
AAAACTACAG TAGCATTATA TAGAATGATC CAAAAAAGAC AGTATAAAAA CTTAGGAAGA
CGTTTATATA TTGCTTATAA TGATTTGCTT GTGAATAATG CTGAAGAACA ATTTTATAAA
ATAGTGACTA CCAACTGTCA ATTAGAACTA GAATCAAAGA AATCAAACAA CCAAGTAATT
TTTGAGTTTA AAAATATACA GAAGCTATGT TTAGAAATTC TCAAAAAGCA TCAAAAAATA
TATTATTTAC AAGATGAGGT AAACTATCAA GTATTTTCAG AAATGTACAG AGCACATCCT
GGAAAAAAAC AATATCCAAC AAATTTAATA TGGGAAGAAA TTCGAGGTAT AATCAAAGGA
AAACAGTTAG CCATAACAGA AGATATTTTA TCTGAGAAAG AATATGAAAA AATAACGAGA
AATCGTGTCA TTTCAATGTC TAACAAAAAT CGCCGAGAGA TATACAAAAT AGCAGAATGG
TATCAAAAAA AACTTCAAAA AGAAAAACTA TATGATGAAA TAGATATAGT CAGACAAGTC
TTGCAATTGC TAAAAAATAA TCCTAGGAAA AAATATGATT TAATTGTTTG TGACGAAGTA
CAAGATTTGA CAGAAATACA ATTAGAGTTG TTATTTAATT TAGTTGCTCC CAGCGGAAAT
TTATTTTTTG CAGGAGACTC TTATCAAATG ATTAGTCCCA GTGGTTTTCG TTGGGAAACA
CTAAAAAATA AATTTTATCC CCACAGACAA GTATATCAAC AAACTTTGAA ATTTAACTTT
CGCAGTGTAG GAAGCCTAGT GAATTTAGCA AATCAACTAC TAAAATTACG TTCTCGATAC
TTAGCAAAAT CTGTAAGTAA TTATTCAATA AGTAACAGTA TTTCTGGTCA ATTAGCAAGG
CTAATTTCAG CAGATTATCA AACATTAATA GGAATATTAA AAGAAACATC TTTGTATCCT
GGTGATGCTA TATTAGTCCG AAAAGAATCA GACAAAGAAA AAATTAGAGC CGACTTAAAT
TCTAGTTTTG TTTTTACAAT TGAAGAAATA AAAGGACTAG AATTCGATAC AGTTTTCATT
GTAGATTTTT TTCAGCCACA AGCAAAACTT TGGAGTAAAG TAATACGAGG TGGGATACTA
AAAGAAAAAG AAAAACCACA ACTACAACTA GAATTCAACT TACTTTATGT AGGAATTACT
CGTGCTAGTC GAATTTTAAA TATTTGGGAA TCAAGGCCTA GTCAGCTTTG GCAAGAACCA
GAATTAAGAG GTTTATTTCA GTCAATAATT CCTGAATTAG TAAGAAGTGA TTGTATAGAA
ACTAGCCCAG AAAGATGGCG TCAGCAAGGA GAATATTATC TTAAGTCTGA GTTTTATCAA
CAAGCAAAAG AATGCTTTAA TAAATCTGGA GATGTGATTT TAGAGAAACA AGCTCAAGGT
AAGTTTTTAA TTCAAAAACA AGCTTATTAT GAAGCAGCAG AAATTTTTGT TGAGTTAACA
GAATGGCAAG AAGCAGCACT GTTATTTGAG AAAGTAGGAA AATGGCAAGA AGCAGCAAAA
TCTTGGGCAA ATATAGGAGA ATATAAGAAG CAAAAAATTT GTGAAGCTTC TCAGCTAGAA
GCAAACTTCA AATGGTCAGA AGCAGCTCAA AAATGGGAAG AAATTCCAGA TTTTAGTAAT
GCTAAACGGT GCTGGATGAA AGTTCCTCAA AAAAAAGCAG AATACCGTGC TATGGAACTT
GAAAAAAAGA GGCAATGGTT AAAAGCTGCT ATTGAATATG ACCGAGCAAA AATACCTCAG
AAAGCAGCAT TTTGTCGAGC TAGAGAATTT GAAAAGAAAA AACAATGGAA AGAAGCTATG
ACGCAATATC AAATAGCAGC TATGAGCGAA AAAGTTGAAA AATGTCGCCA GGAAGCAGTA
AATGTATTGC ACAACCAAGG GTTAATCAAA CTACAAAAAA GAGATCATAC TGGTGCTATT
GAAGATTATA ATCAAGCTAT TTTCTTAGAA AAGAATAATT ATTTATTATA TCATAACAGA
GCTATTGCAA TTGCCCAAAT GGGAAACTTA AAAGGAGCTA TAGAAAATTT TAAAAAAGCA
CTAGAACTAG AACCAAAAGA CCTACAAACC TATAATAATT TAGGGGCAGC TTATGTAGAA
CTAGGAGAAT TTAATGAAGC CATAGAGCTT TTTTCCCAAG CCCTGAAAGT AGATTCTCAA
GATTCTCAAA TTTATCAAAA CTTAGGAGTA GTCCGTTTTA AGGCAGGAGA TAAGCAAGGA
GCTATAGCAG ATTATAATCA AGCCATAAAA CTTAATCCCA ACAAACCAGA AGCTTATTAT
AATAGAGGTA TTGCTTATCG TTTTCTTGGG CATAACCAAG ATGCAATGAA TGACTTTACA
AAAGTATTAC AACTTCATCC TAGAGTTGTA GATGCTTACA CTCAGCGAGG TATTGTCAGG
TTTGAGGTTA AAGATATAGA GGGAGCGATC GCTGATTTCA ATGATGCTAT CAAGCTTAAT
CCTAAACATC CTGAAGCTAT CTACAACAGG GCTATAATTC GTCGTTTGAC CAAAGATAAT
CAGGGTTCAC TAGATGATTT AAACAAAGTT ATACAGCTCC ATCCTAAGTA TATAGATGCT
TATATCAAAC GAAGTATAGT TCGTTTTGAT CTTGGAGATC ATGAAGGTGC CCTCAAAGAC
TTAGATTCTG CAGTGCAACT TCAACCCAAC AATGCAGAAG CTTATTACCA ACGAGCTAAT
ACTAAACGCA GCATGGGAGA TATTTTAAGT GCGATCGCTG ATTTTGAGAA TGCTATACGT
TTGAACCCTA AATATCATCA AGCTTATAAC GATATGGGTA TTGTGAGACT GAGAAGAGGA
GATATCTCAG GGGCAATGGA AAACTTTGAA GCAGCTATAC AAATTAATCC TAACTATGCT
GAAGGTCATA ACAACCGTGG TTTTACAAAG TTTAGACGAG GGGATATTCC AGGAGCAATG
AAAGACTTTG AAGCAGCTAT ACAAATTAAT CCTAATTACG CTGAAGCATA TAATAATCTG
GGAAATTCTC GCTTTCAAAC AGGAGACTTT CAGGGAGCCA TGAGGGACTT TGGTGAAACT
TTACGCATTC ATCCCAAATA TGTTCCAGCC TATAATAATA GGGCTTTAGC ACTTTTGAAA
TTAGGAGATT TTTCTGGAGC AACTACTGAT TGCTATCAAG CGCTAAAAAT TAATCCTAAG
TATGGTTTAG CTTACTATAA TTTAGGCTTA ATTCATACTG AGATGGGAGA TTTAGAGCAA
GCTATTTTAG ACTATAATGA AGTATTACGA ATATATCCGA GAAAAATTGA TGCTTATGTT
AACCGAGGGT TAATTTATCT GAAGTTAAAA AACTATACCC AAGCGATCAA GGATCAAACT
AGTGCTTTGA ATATTAATCC TAATTTGCCT CACGTTTATT CTTTTCGTAG CGAAGGATAT
ATTCAGTTAG GAGAATTTAA AGCAGGTATT GATGACTTGC ACAAAGCAGC AGAAATTTAC
CAGCAACAAG GAAAGCTAGA AGAACGGGAT AAGATGATGA AGAGAATTGA GAAGATAAAA
GAATAG
|
|---|
| Protein sequence | MSLPAVLHPD IVEFLRKEIG SNLQKRVWEC IQTLKQQKFN SGLRVKKLKG INKRVWEARI
NSASRLIFTY DKSQRPETGK AQVYLAIQDI CVDHDDVSRR AKARKNRPDA EWLETPEFEV
ILETNNFKNQ DNNIDKNILY SSVEKANIEA MKALDLETNS DLTDDELLGN IQWRVLESET
EWQKAIIEQN TDLPLKLTPE EYKLAKLSGN LLLSGSAGTG KTTVALYRMI QKRQYKNLGR
RLYIAYNDLL VNNAEEQFYK IVTTNCQLEL ESKKSNNQVI FEFKNIQKLC LEILKKHQKI
YYLQDEVNYQ VFSEMYRAHP GKKQYPTNLI WEEIRGIIKG KQLAITEDIL SEKEYEKITR
NRVISMSNKN RREIYKIAEW YQKKLQKEKL YDEIDIVRQV LQLLKNNPRK KYDLIVCDEV
QDLTEIQLEL LFNLVAPSGN LFFAGDSYQM ISPSGFRWET LKNKFYPHRQ VYQQTLKFNF
RSVGSLVNLA NQLLKLRSRY LAKSVSNYSI SNSISGQLAR LISADYQTLI GILKETSLYP
GDAILVRKES DKEKIRADLN SSFVFTIEEI KGLEFDTVFI VDFFQPQAKL WSKVIRGGIL
KEKEKPQLQL EFNLLYVGIT RASRILNIWE SRPSQLWQEP ELRGLFQSII PELVRSDCIE
TSPERWRQQG EYYLKSEFYQ QAKECFNKSG DVILEKQAQG KFLIQKQAYY EAAEIFVELT
EWQEAALLFE KVGKWQEAAK SWANIGEYKK QKICEASQLE ANFKWSEAAQ KWEEIPDFSN
AKRCWMKVPQ KKAEYRAMEL EKKRQWLKAA IEYDRAKIPQ KAAFCRAREF EKKKQWKEAM
TQYQIAAMSE KVEKCRQEAV NVLHNQGLIK LQKRDHTGAI EDYNQAIFLE KNNYLLYHNR
AIAIAQMGNL KGAIENFKKA LELEPKDLQT YNNLGAAYVE LGEFNEAIEL FSQALKVDSQ
DSQIYQNLGV VRFKAGDKQG AIADYNQAIK LNPNKPEAYY NRGIAYRFLG HNQDAMNDFT
KVLQLHPRVV DAYTQRGIVR FEVKDIEGAI ADFNDAIKLN PKHPEAIYNR AIIRRLTKDN
QGSLDDLNKV IQLHPKYIDA YIKRSIVRFD LGDHEGALKD LDSAVQLQPN NAEAYYQRAN
TKRSMGDILS AIADFENAIR LNPKYHQAYN DMGIVRLRRG DISGAMENFE AAIQINPNYA
EGHNNRGFTK FRRGDIPGAM KDFEAAIQIN PNYAEAYNNL GNSRFQTGDF QGAMRDFGET
LRIHPKYVPA YNNRALALLK LGDFSGATTD CYQALKINPK YGLAYYNLGL IHTEMGDLEQ
AILDYNEVLR IYPRKIDAYV NRGLIYLKLK NYTQAIKDQT SALNINPNLP HVYSFRSEGY
IQLGEFKAGI DDLHKAAEIY QQQGKLEERD KMMKRIEKIK E
|
|---|
| |