Gene Tery_2377 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTery_2377 
Symbol 
ID4245025 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTrichodesmium erythraeum IMS101 
KingdomBacteria 
Replicon accessionNC_008312 
Strand
Start bp3670590 
End bp3672419 
Gene Length1830 bp 
Protein Length609 aa 
Translation table11 
GC content39% 
IMG OID638107470 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_722070 
Protein GI113476009 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.40782 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTATAA ATTATCGAAC TGGAAAAGTC ATTACTTCAG AAAATAGAGG GAAATGGCAA 
GGACTAATTA TTGGTATTGG CATTGGTGTA ATTGCTAGTT TAGTGAGTAT GCAAGTTTCT
AGACAAAAGC AAAAGACTGA AGCTAATACC ACTTCTACCC AAGCCATTAA AGGTGCAATA
GAGACTAATT TGGCCCCCAC TATGAGCGTG ACAGTGGCAA GAGTAGAATT AGCAAGGGTA
GAACGCACCC TTAATGCTAC AGGTAGCGTT GTTGCCTTCG ATCTATTACC AGTGTTACCC
CAGGTGAGTG GGTTACAAAT TCAACAAGTC TTGGTAGAGG AAGGGGAAAC AGTTACTCAA
GGTCAGGTAA TGGCAATTTT AGATGACTCC GTTTTGAAAT CGAAAATTAA CCAAGCTAAA
TCTCAAGTAG CATCAGCTCG CAGTCAAGTA GAGCAAAGAA GGGCTGTTCA CAGTAAGACG
AAAGTAGGTG TGGAGCAAGC TATTGCTGCT TGGGAACAAG CAAGAGCAGA ACGTGATGGT
GTCAAAGCTA CTATTACTCA GGCTCAAGCA GGTAAAGATG AGGCGATCGC TGCTCTCAAA
CAAGCTCAAG CAAGTCGGGA TGATGCTTTT GCCGCTCTCA AACAAACTCA AGCAAGTCGG
GATGATGCTT TTGCCGCTCT TAGACAAACC CAAGCAAGTC GGGATGACAC CCTGGCGTTT
GTAGCGCAAA CTGAAGCTAG GTTATCAGAA GCTCAAGCTA ACGAAGAACA AACCCTGAGA
GATTTTGAGC GATATCAAAC TCTGAGAGGG GAGGGTGTTA TTAGTTCTCA AGAATTAGAA
ACTCGTAGCA CGGCTACGAA AACAGCTAGG GAAGGGGTTC GAGTTGCTAA AGCTAATATT
AATAGTGCTC AAGCTAAGGT TGACATTGCT GAAGCGAATA TTGATAGTGC TCAAGCTAAG
GTTGACATTG CTGAAGCGAA TATTGATAGT GCTCAAGCTA AGGTTGACAT TGCTGGATCA
AATGTTAGGA GTGCAGAAGC TAGGGTAGAA AGTGCACAAG CAAGTCTCAG TAGTACAATA
GCTCAACTAC GGAGTGCAGA GGCTAAAGTT AATAGTGCTA AAGCTAATAT TAGTAGCGCT
CAAGCAGAAG TTAATAGTGC ATTATCCAAT ATTAATAGTG CTATGTCAAG TGTTAGCAGT
GACGAAGCTC GCCTAGAAGA AAAACAAACT CAGCTCTCAC AGACTTTAGT GAAAGCTCCA
GCAAATGGTA TATTAGCAGA ACGGATAGCT CGTGTTGGTG ATGTGAGTTC TAGTAGTAAA
AAATTATTTT CAATTATTAA AGATAATCAA TTAGAATTAC AATTAGAAGT ACCAGAAACT
CAGTTACCAC AAGTTAAAAT TGGCACAAAA GTTAATATTA GTTCTGATGC TGATAGTAGG
ATAAAAATTT CAGGAATAGT GAGACAAATA GCACCATTAG TTAATGAACA AACTCGCGAA
GCTACTGTCA AAATAGACCT ACCTAATAGT GATTTATTAC GACCAGGAAT GTTTTTGCGG
GCAAAAATTA CAACTGCTAC AAATCAAGGA TTAAAAATTC CAGCAAAAGC AGTATTACCT
CAAACAGATG GGCAGTCTAT TGTTTATGTT TTGCAAAGTA ATAATAAAGT TAAAGCTATG
CCTGTAGAAG TAGGAAAAAT TTTAGGTAAA AATAGTGATT TAGCTAATGC TGAAATTGAA
GTAAAAAAGG GTTTAGATTT AGGTAATAAA GTAGTATTAG CAGGTGCAGG TTATTTGAAA
GATGGAGATA TAGTTAAAGT TATTGAGTAA
 
Protein sequence
MAINYRTGKV ITSENRGKWQ GLIIGIGIGV IASLVSMQVS RQKQKTEANT TSTQAIKGAI 
ETNLAPTMSV TVARVELARV ERTLNATGSV VAFDLLPVLP QVSGLQIQQV LVEEGETVTQ
GQVMAILDDS VLKSKINQAK SQVASARSQV EQRRAVHSKT KVGVEQAIAA WEQARAERDG
VKATITQAQA GKDEAIAALK QAQASRDDAF AALKQTQASR DDAFAALRQT QASRDDTLAF
VAQTEARLSE AQANEEQTLR DFERYQTLRG EGVISSQELE TRSTATKTAR EGVRVAKANI
NSAQAKVDIA EANIDSAQAK VDIAEANIDS AQAKVDIAGS NVRSAEARVE SAQASLSSTI
AQLRSAEAKV NSAKANISSA QAEVNSALSN INSAMSSVSS DEARLEEKQT QLSQTLVKAP
ANGILAERIA RVGDVSSSSK KLFSIIKDNQ LELQLEVPET QLPQVKIGTK VNISSDADSR
IKISGIVRQI APLVNEQTRE ATVKIDLPNS DLLRPGMFLR AKITTATNQG LKIPAKAVLP
QTDGQSIVYV LQSNNKVKAM PVEVGKILGK NSDLANAEIE VKKGLDLGNK VVLAGAGYLK
DGDIVKVIE