Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tery_2377 |
Symbol | |
ID | 4245025 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Trichodesmium erythraeum IMS101 |
Kingdom | Bacteria |
Replicon accession | NC_008312 |
Strand | + |
Start bp | 3670590 |
End bp | 3672419 |
Gene Length | 1830 bp |
Protein Length | 609 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 638107470 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_722070 |
Protein GI | 113476009 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.40782 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTATAA ATTATCGAAC TGGAAAAGTC ATTACTTCAG AAAATAGAGG GAAATGGCAA GGACTAATTA TTGGTATTGG CATTGGTGTA ATTGCTAGTT TAGTGAGTAT GCAAGTTTCT AGACAAAAGC AAAAGACTGA AGCTAATACC ACTTCTACCC AAGCCATTAA AGGTGCAATA GAGACTAATT TGGCCCCCAC TATGAGCGTG ACAGTGGCAA GAGTAGAATT AGCAAGGGTA GAACGCACCC TTAATGCTAC AGGTAGCGTT GTTGCCTTCG ATCTATTACC AGTGTTACCC CAGGTGAGTG GGTTACAAAT TCAACAAGTC TTGGTAGAGG AAGGGGAAAC AGTTACTCAA GGTCAGGTAA TGGCAATTTT AGATGACTCC GTTTTGAAAT CGAAAATTAA CCAAGCTAAA TCTCAAGTAG CATCAGCTCG CAGTCAAGTA GAGCAAAGAA GGGCTGTTCA CAGTAAGACG AAAGTAGGTG TGGAGCAAGC TATTGCTGCT TGGGAACAAG CAAGAGCAGA ACGTGATGGT GTCAAAGCTA CTATTACTCA GGCTCAAGCA GGTAAAGATG AGGCGATCGC TGCTCTCAAA CAAGCTCAAG CAAGTCGGGA TGATGCTTTT GCCGCTCTCA AACAAACTCA AGCAAGTCGG GATGATGCTT TTGCCGCTCT TAGACAAACC CAAGCAAGTC GGGATGACAC CCTGGCGTTT GTAGCGCAAA CTGAAGCTAG GTTATCAGAA GCTCAAGCTA ACGAAGAACA AACCCTGAGA GATTTTGAGC GATATCAAAC TCTGAGAGGG GAGGGTGTTA TTAGTTCTCA AGAATTAGAA ACTCGTAGCA CGGCTACGAA AACAGCTAGG GAAGGGGTTC GAGTTGCTAA AGCTAATATT AATAGTGCTC AAGCTAAGGT TGACATTGCT GAAGCGAATA TTGATAGTGC TCAAGCTAAG GTTGACATTG CTGAAGCGAA TATTGATAGT GCTCAAGCTA AGGTTGACAT TGCTGGATCA AATGTTAGGA GTGCAGAAGC TAGGGTAGAA AGTGCACAAG CAAGTCTCAG TAGTACAATA GCTCAACTAC GGAGTGCAGA GGCTAAAGTT AATAGTGCTA AAGCTAATAT TAGTAGCGCT CAAGCAGAAG TTAATAGTGC ATTATCCAAT ATTAATAGTG CTATGTCAAG TGTTAGCAGT GACGAAGCTC GCCTAGAAGA AAAACAAACT CAGCTCTCAC AGACTTTAGT GAAAGCTCCA GCAAATGGTA TATTAGCAGA ACGGATAGCT CGTGTTGGTG ATGTGAGTTC TAGTAGTAAA AAATTATTTT CAATTATTAA AGATAATCAA TTAGAATTAC AATTAGAAGT ACCAGAAACT CAGTTACCAC AAGTTAAAAT TGGCACAAAA GTTAATATTA GTTCTGATGC TGATAGTAGG ATAAAAATTT CAGGAATAGT GAGACAAATA GCACCATTAG TTAATGAACA AACTCGCGAA GCTACTGTCA AAATAGACCT ACCTAATAGT GATTTATTAC GACCAGGAAT GTTTTTGCGG GCAAAAATTA CAACTGCTAC AAATCAAGGA TTAAAAATTC CAGCAAAAGC AGTATTACCT CAAACAGATG GGCAGTCTAT TGTTTATGTT TTGCAAAGTA ATAATAAAGT TAAAGCTATG CCTGTAGAAG TAGGAAAAAT TTTAGGTAAA AATAGTGATT TAGCTAATGC TGAAATTGAA GTAAAAAAGG GTTTAGATTT AGGTAATAAA GTAGTATTAG CAGGTGCAGG TTATTTGAAA GATGGAGATA TAGTTAAAGT TATTGAGTAA
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Protein sequence | MAINYRTGKV ITSENRGKWQ GLIIGIGIGV IASLVSMQVS RQKQKTEANT TSTQAIKGAI ETNLAPTMSV TVARVELARV ERTLNATGSV VAFDLLPVLP QVSGLQIQQV LVEEGETVTQ GQVMAILDDS VLKSKINQAK SQVASARSQV EQRRAVHSKT KVGVEQAIAA WEQARAERDG VKATITQAQA GKDEAIAALK QAQASRDDAF AALKQTQASR DDAFAALRQT QASRDDTLAF VAQTEARLSE AQANEEQTLR DFERYQTLRG EGVISSQELE TRSTATKTAR EGVRVAKANI NSAQAKVDIA EANIDSAQAK VDIAEANIDS AQAKVDIAGS NVRSAEARVE SAQASLSSTI AQLRSAEAKV NSAKANISSA QAEVNSALSN INSAMSSVSS DEARLEEKQT QLSQTLVKAP ANGILAERIA RVGDVSSSSK KLFSIIKDNQ LELQLEVPET QLPQVKIGTK VNISSDADSR IKISGIVRQI APLVNEQTRE ATVKIDLPNS DLLRPGMFLR AKITTATNQG LKIPAKAVLP QTDGQSIVYV LQSNNKVKAM PVEVGKILGK NSDLANAEIE VKKGLDLGNK VVLAGAGYLK DGDIVKVIE
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