| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_2342 |
|---|
| Symbol | smpB |
|---|
| ID | 4245224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 3617964 |
|---|
| End bp | 3618434 |
|---|
| Gene Length | 471 bp |
|---|
| Protein Length | 156 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 638107435 |
|---|
| Product | SsrA-binding protein |
|---|
| Protein accession | YP_722035 |
|---|
| Protein GI | 113475974 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0691] tmRNA-binding protein |
|---|
| TIGRFAM ID | [TIGR00086] SsrA-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0903697 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAAA AAAGTGGTGA AGGACAAAAA ATAATTAGTG ATAATCGCCA GGCAAGGTTT
AACTATCATA TTATAGAGAC TTATGAAGCT GGCGTGGCAT TACAAGGAAC AGAAGTAAAA
TCAATCCGAG AAGGTAAAGT CAACCTACGG GATGGTTATG CTTTAATTCG TAATAATGAA
GCATGGTTAC TTAACGTTCA TATTTCCCCA TATCAAAAAG CAGGAGATTT TTTTAATCAC
GAACCCCGGC GTAGTAGAAG ACTATTGTTA CATAAACAAG AAATTCGAAA ATTAATTGGA
AAAGTAGAAC AACAGGGATT AACTTTAGTA CCATTGAGAA TGTATTTTAA GCGTGGTTGG
GTAAAAGTCG ATATTGCTTT AGCACAAGGT AAAAAACTTT ATGATAAGCG TGAAACTATT
AAACGTAGAG ATGATAAACG GGCTATGCAA AGAGCAATTA AACAATACTA G
|
|---|
| Protein sequence | MAKKSGEGQK IISDNRQARF NYHIIETYEA GVALQGTEVK SIREGKVNLR DGYALIRNNE
AWLLNVHISP YQKAGDFFNH EPRRSRRLLL HKQEIRKLIG KVEQQGLTLV PLRMYFKRGW
VKVDIALAQG KKLYDKRETI KRRDDKRAMQ RAIKQY
|
|---|
| |