Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tery_2187 |
Symbol | aroE |
ID | 4242639 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Trichodesmium erythraeum IMS101 |
Kingdom | Bacteria |
Replicon accession | NC_008312 |
Strand | + |
Start bp | 3414061 |
End bp | 3414966 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 638107290 |
Product | shikimate 5-dehydrogenase |
Protein accession | YP_721890 |
Protein GI | 113475829 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0169] Shikimate 5-dehydrogenase |
TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.134368 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTACAA GTAAAACAAA ATTATTAGGA GTCATTGGTT ATCCTCTTGA ACATTCTCTG TCTCCTTTAA TGCACAATGC TGCAATTCAA GCAATAAATG CTCAACAAGC TCAACAAAAT TTAATTGATT ATATATATCT ACCTTTCCCT ATTAAACCAG AAAATTTAAA CGCAGCTATT ACGGGATTTT CTGCTATTGG CGTTCAGGGT TTTAATATTA CTATCCCTCA TAAACAAACA ATAATGCCAC TATTATCAGA AGTTTCCGAT ATCGCTCAGG CGGTGGGAGC AGTTAATACT GTTTATAAAA CACATTCTCA TAGAACACAT CAAGGATGGA CGGGGACAAA TACAGATGTG GCAGGATTTC TGGCCCCACT ACAAACCTAT CGTTGGGATA TGCATCAAAA AGTAGCAGTA ATTTTAGGTA ACGGTGGTGC TTCTCGTGCA GTTGTTGCGG GTTGCATTCA GTTAGGTTTT GCAGAAATTC ATATTATTGG TCGGTCAATA GAAAAATTAA CTGCTTTTCA GCAAAGTTGG CTTAATTCTC CTCTAGCCAT AAGTTTGAAA ATACATAAAT GGGATAAACT GTCAAGCTTA ATTTCACAGG CAGATTTGTT AGTTAACACA ACTCCTATAG GAATGTACCC AAACATTCAG GAGTCTCCAG TAGATGAGAA GGTTTTTGAC AAATTGTCGC CAGGGGCGAT CGTCTATGAC TTAATTTATA TTCCTAACCC TACTAAGTTT CTTCAGCAAG CTCAGGAGAG GGGAGCGATC GCTATTGACG GTTTAGAAAT GTTAGTTCAA CAAGGAGCTG CTGCCTTAGA ACTATGGTTA CAACAGTCTG TACCAGTGGA TGTTATGCGC TATTCTTTGC ATAAACATTT AGGATTAAAT AAATAA
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Protein sequence | MITSKTKLLG VIGYPLEHSL SPLMHNAAIQ AINAQQAQQN LIDYIYLPFP IKPENLNAAI TGFSAIGVQG FNITIPHKQT IMPLLSEVSD IAQAVGAVNT VYKTHSHRTH QGWTGTNTDV AGFLAPLQTY RWDMHQKVAV ILGNGGASRA VVAGCIQLGF AEIHIIGRSI EKLTAFQQSW LNSPLAISLK IHKWDKLSSL ISQADLLVNT TPIGMYPNIQ ESPVDEKVFD KLSPGAIVYD LIYIPNPTKF LQQAQERGAI AIDGLEMLVQ QGAAALELWL QQSVPVDVMR YSLHKHLGLN K
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