| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_2000 |
|---|
| Symbol | |
|---|
| ID | 4243427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 3116621 |
|---|
| End bp | 3117832 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 33% |
|---|
| IMG OID | 638107115 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_721722 |
|---|
| Protein GI | 113475661 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.824433 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TTAATACAAA TGAATTCTAT GCTCCACCAT TTCCAGAAAA TAATGCCATC
AAATGGCTCA GAGAAAATTT TTTTAGTACC TGGTACAACA CCCTACTAAG CTTAATATTA
TTCAGCCTAA TTTTATGGGG TGTAATTAAC TTTATTTCCT GGGCAAAAAC AGAAGCAGAA
TGGCAAGTTA TAAAAGTTAA CTTGCCATTA TTAATGGTGG GTAGATATCC TAGAGACCAA
TATTGGCGCA TCTGGGTAAT AGTCGGAATA ATTTCTAGTT TATTTGGTTT TTCTTGGGGA
GTTATTGCTA GAAATTCAGC TCAACTATTT ACGTTGCCAG TTTTAATTGG CATCGCTTTT
TTACCTGTAA TTATATTAAT TATCCCAGTA AATGTATTTT TTAAACTATT ACTATTAGGG
ATGGTAATTT TAGTTGTTGC TACAGCCTGG AGTGGAAAAA AATTAAGCAT AAAAAATAGC
AAATTAGGGA AATATCTATC TTTTTATTGG TTGATTGCTT TTATCTTAAT TGTCTGGTTA
ATTGGGGGCG GTTTGGGTCT AAAGTCTGTT TCTACAAATG ACTGGGGTGG TTTAATGCTA
ACTGTATTAA TGGCTGTAGT TAGCATTTTT TTATCTTTTC CATTAGGGGT TTTATTAGCT
TTGGGCAGAC AAAGTACATT ACCAGTAATT AGAATTTTTT CTATTGGTTA TATTGAAATT
ATTCGTGGAT TACCTTTAAT TTCAATTCTA TTTATGGGGC AAATTCTGAT TCCTCTATTT
TTGCCAGATG GAATGCGACC TGATAGAATT TTTCGGGCAA TTTTAGGATT GACTTTATTT
AGTGCTGCTT ATTTAGCAGA GAATGTTAGG GGTGGTTTAC AGTCGGTACT AAGAGGTCAA
AGTGAAGCGG CAAAAGCATT AGGTTTAAAT ACTCCATTGA GTTTAGGATT AATTGTTTTA
CCTCAAGCTT TAAAAGTAGC TATTCCCTCT ATTGTTGGTC AATTTATTAG TCTATTTCAG
GATACTACTT TATTATCAAT TGTGGGATTA GTAGAGTTGT TGGGTATTAG TCGCTCTATT
TTAGCTCAAC CTGAATTTTT AGGAGATTAT GCTGAGGTTT ATTTATTTGA TGGTATCATT
TTTTGGATTG TTTGTTATGC TATGTCAGTA GGTAGTCGGC AGTTGGAGAA AAAACTAAAT
ACTACGAATT AA
|
|---|
| Protein sequence | MKKINTNEFY APPFPENNAI KWLRENFFST WYNTLLSLIL FSLILWGVIN FISWAKTEAE
WQVIKVNLPL LMVGRYPRDQ YWRIWVIVGI ISSLFGFSWG VIARNSAQLF TLPVLIGIAF
LPVIILIIPV NVFFKLLLLG MVILVVATAW SGKKLSIKNS KLGKYLSFYW LIAFILIVWL
IGGGLGLKSV STNDWGGLML TVLMAVVSIF LSFPLGVLLA LGRQSTLPVI RIFSIGYIEI
IRGLPLISIL FMGQILIPLF LPDGMRPDRI FRAILGLTLF SAAYLAENVR GGLQSVLRGQ
SEAAKALGLN TPLSLGLIVL PQALKVAIPS IVGQFISLFQ DTTLLSIVGL VELLGISRSI
LAQPEFLGDY AEVYLFDGII FWIVCYAMSV GSRQLEKKLN TTN
|
|---|
| |