| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_1812 |
|---|
| Symbol | |
|---|
| ID | 4244526 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 2763776 |
|---|
| End bp | 2764633 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 638106934 |
|---|
| Product | Sec-independent protein translocase TatC |
|---|
| Protein accession | YP_721542 |
|---|
| Protein GI | 113475481 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0805] Sec-independent protein secretion pathway component TatC |
|---|
| TIGRFAM ID | [TIGR00945] Twin arginine targeting (Tat) protein translocase TatC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00710402 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000512966 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACACTTC CAGAGGACTT AAATAAGAAT AGTTTAGCAC CTACACCTAC AGGTCTAAAA
AATCCAGAAA TTAGCTCTGA TAAAGTGGAG GATATTACTT CCCCAGACTT AGAAGATCCC
CGGAATTCGG AAGCAGATGA TAATCTTGAC AAAGTTCCTG ATGAAGTTGA AATGTCGATA
TTTGAGCATC TCGAAGAGTT ACGAATGCGG ATATTCTCTT CTTTAATAGG AGCAATAGTA
GGTATCTTAT GTTGTTTCAT TTTTGTTAAA CCCATTGTCA AATTTCTAGA AGTTCCAGCT
CAAGGAGTGA AATTTATCCA ACTCGCTCCA GGAGAATACT TTTTTGTCAC TATTAAAGTT
GCTGCTTATG GGGGTCTTCT CTTAGCAAGT CCCTTTATAC TTTATCAAAT AATTAAATTT
GTTCTCCCTG GTTTAACGAC TAGAGAAAGA AGATTTCTCG GACCAATTTT CTTAGGTTCT
ACAGTCTTAT TTGGACTGGG GTTAGTATTT GCTTATTTTG CAATTGTACC AGCAGCTTTA
AAGTTTTTTA TTGGTTATGG TTTAGAAGCG GTAGAGCAAG CATGGTCAAT TGAAAAATAC
TTTGAATTTG TATTACTATT AATGTTTAGT ACGGCATTAG CATTTCAAGT TCCAATTCTA
CAATTATTAT TAGGTATTGT GGGAATAGTT AATTCTCAAC AAATGTTATC CAGTTGGAAA
TATGTATTGT TAGGATCTGT AGTTTTAGGA GCTGTTTTAA CTCCTTCTAC TGACCCTTTG
ACTCAAAGTC TATTAGGTGG AGCTGTAGTT GCTCTTTATC TTGCAGGTAC TTTTGTTGTT
AAGTTAATTG GCAAATAA
|
|---|
| Protein sequence | MTLPEDLNKN SLAPTPTGLK NPEISSDKVE DITSPDLEDP RNSEADDNLD KVPDEVEMSI
FEHLEELRMR IFSSLIGAIV GILCCFIFVK PIVKFLEVPA QGVKFIQLAP GEYFFVTIKV
AAYGGLLLAS PFILYQIIKF VLPGLTTRER RFLGPIFLGS TVLFGLGLVF AYFAIVPAAL
KFFIGYGLEA VEQAWSIEKY FEFVLLLMFS TALAFQVPIL QLLLGIVGIV NSQQMLSSWK
YVLLGSVVLG AVLTPSTDPL TQSLLGGAVV ALYLAGTFVV KLIGK
|
|---|
| |