| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_1671 |
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| Symbol | |
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| ID | 4242826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Trichodesmium erythraeum IMS101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008312 |
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| Strand | - |
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| Start bp | 2542658 |
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| End bp | 2546200 |
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| Gene Length | 3543 bp |
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| Protein Length | 1180 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 638106806 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_721415 |
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| Protein GI | 113475354 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTAT CATCTATTAT TAGGCTACTG GGGCGATCGC CTCTCACAAC CGAACTCCTA
AACAAACTCC AACAATACCA ATGCTTAGGA CTCAACGGCG CTTCCCGTTT ACCTAAAGGT
TTACTCACAT CCACCCTCGC ACAACAACAA GAGCAAAATT TGCTGATAGT TACTGCAACT
TTAGAAGAGG CGGGCCGATG GGCGGTACAG TTAGAAGCAA TAGGATGGCC TAAAGTTCAC
TTTTACCCTA CTTCAGAAGC ATTCCCTTAT GAACCTTCCA ACTCAGAAGA AATGATTTGG
GGACAAATGC AGGTTTTAGC AGACTTAATA AGTGAGAATG TCCCAGAAAA TGTAACCAGC
AACGGCAACA GTAGCAATAA AGCAAAAATG GCCGTAGTAG CAACAGAGCG ATCGCTCCAA
CCTCACCTAC CTACAGTTAA AAAATTTCAA CCCTACTGCC TGACCCTTAT GGCCAGCATT
GCTAGTAGCT CAAAAACCTT AGGCTCAACT AAGATATCAA ACACAGATAT AGAGATAAAT
CATTCTGAGT CTGATAGTTT AGAGCGTCCA TCTTTAGAGG AAAAACTTGT CCAGATGGGA
TACGAACTAG TACCATTAGT CGAAACTGAG GGTCAGTGGA GTCGGCGAGG AGATATTATA
GATGTATTTC CCGTGGCCTC AGAATTACCG GTACGCCTAG AATGGTTTGG GGACGAACTC
AGACAAATTC GGGAATTTGA CCCTTCTACC CAACGTTCTC TTGACAAAAT TGCCCAAATA
GTATTAACCC CTAGAGATTT TAGTCAGTGG GCGTTAGGAA ATCTAGAGTC AATAACTGAC
TCAACATTTG TTTCCCTATT AGACTATCTA CCAGAAAATA CTCTGATTGC CATAGACGAA
CCAGATCAAT GTGCTGCCCA TGGCGATCGG TGGTTTGAAC TGGTAGAAGA AAACTGGCAA
CAACTCAAAA GATCTCAAGC ATTACCAAAA ATTCATCGTA CATTTGCAGA CTCCCTGGCA
GAAGCCGAAC TTTTTCCAAG ACTATATTTA TCGGAACTCA CCAAAGAAAC CAAGAGTGAT
ATTACCACCT CAGTTCCCTA TACCATTAAC CTAGCTAGTC GCCCTTTACC AGTCATACCA
CACCAATACG CCAAACTAGC AGAAAACCTG CGCCAACAAA GAGAACGTAA ACATTCCGTT
TTCCTAATTT CGGCTCAACC ATCACGCTCT GTCTCTTTAC TTCAGGAACA CGACTGTCCT
GCTCAGTTTA TTCCCAACTC CCACGACTAC CCTGCCATTG ACAAACTGCA AACCCAATAT
ACCCCTGTTG CTCTCAAATA TAGTGGTCTA GCAGAATTAG AAGGATTTAT TTTGCCCACA
TTTCGGTTAT CAGTTATCAC TGACAGAGAA TTTTACGGAC AACATACCCT CGCTACTCCT
ACCTATATTC GTAAACGCCG TCAAGCGACC TCCAAACAGG TAAACCCCAA CAAACTGCAA
CCGGGAGATC ATGTAGTTCA CCGCCAACAT GGTATTGGCA AATTTGTGAA ATTAGAAAGT
CTGACTCTAA ATAATGAAAC TCGCGACTAT CTAACAATTC AATATGCTGA TGGTTTGCTT
AGAGTTGCTG CCGACCAACT CAGTTCCCTG TCGCGGTTGA GAAGCACTGA TCATAAAAAA
CCCCAACTCA ATAAACTGAC TGGCAAAACC TGGGAAAGTA CCAAAAATAA AGTTCGTAAG
TCAATCAAAA AATTAGCTGT TGACCTGCTG AAGCTTTATG CTCAACGGGC TCAACAAACA
GGTTACAGTT TCCCTCCCGA CACCCCGTGG CAGGAAGAAA TGGAAGATTC ATTTCCCTAT
CAACCTACCC CCGATCAGTT AAAAGCAACC CAAGATGTGA AAAGGGATAT GGAAAGTGAA
CGAGCAATGG ATCGTCTCGT TTGCGGTGAC GTTGGTTTCG GCAAAACAGA AGTCGCCATC
CGAGCAATTT TTAAAGCAGT TATCGCCGAA AAACAAGTAG CATTTCTTGC TCCGACAACA
GTTTTAACCC AACAACATTA TCACACTCTT AAAGAACGTT TTGCTCCCTA CCCTATAGAA
ATAGGTTTGC TCAACCGCTT CCGTACTCCT AACGAAAAGA AAGAAATTCA GCATCGGTTA
GCAACGGGGG AATTAGATAT TATTGTCGGT ACTCACTCAA TTTTAAGTAA GACGATCCAG
TTTCGGGAAT TAGGTTTGTT GGTAGTGGAT GAGGAACAAC GGTTTGGTGT TAACCAGAAG
GAAAAAATTA AGGCGCTCAA AGCCGAAGTG GATGTGCTGA CACTGACGGC AACGCCAATT
CCCAGAACAT TATATATGGC ACTTTCAGGA ATTCGGGAAA TGAGTGTGAT TACAACTCCA
CCACCTTTGC GTCGCCCTAT TAAAACTCAC CTTGCACCTT ATGATCTTGA AACTGCCCGT
ACAGCAATTC GCCAAGAATT AAACCGGGGA GGACAAGTCT TTTATGTGGT GCCACGTATT
GAAGGTATTG AAGAATTGGC GGGAAAATTG CGAGAAATGA TTCCAGGAGC TAGGATTAAT
ATTGGTCACG GTAAAATGGA TGCAGCAGAG TTAGAGTCAA TTATGCTGAC TTTTAGTGCG
GGGGAAGCTG ATATTTTAGT TTGTACTACA ATTATTGAAT CTGGTTTAGA TATTCCCCGA
GTTAATACTA TTTTAATAGA AGATGCTCAA AAATTTGGCT TGTCTCAGTT GTATCAGCTA
CGGGGAAGAG TAGGTAGGGC AGGGGTGCAA GCTCATGCAT GGTTGTTTTA TCCTACCACG
AGCTCCGGTG GAATTGCACT AACGGATGAT GCACAAAAAC GGTTGCGAGC AATTCAGGAA
TTTACTCAGT TGGGTTCAGG ATATCATTTG GCAATACGAG ATTTAGAGAT TCGGGGAGCA
GGGGATATTT TGGGAGCAGA GCAGTCTGGT CAGGTGAACG CTATTGGATT TGATCTGTAT
ACGGAAATGT TAGAAGAGGC AATTCGGGAA ATCAAAGGTC AGGAAATTCC TCAAGTTGAT
GATACGAAAA TTGACCTAAG TTTGACTGCA TTTATTCCTG CAGATTATAT TTTAGATTTA
GATCAAAAAA TTAGTGCCTA TCGCTCGGTT GCTGCTGCTA ATACTAGAGA AGAATTGAGT
CAAATAGAAG TTGATTGGAG CGATCGCTAC GGTGCAATTC CAAAAGCTGG TTTACAGTTA
TTAAGGATGA TGGAATTAAA GCAAGTTGCT AAAAAAATAG GCTTTTCTCG GATTAAAGTA
GAAGGTAAAC AACACGTTAT TTTAGAAACA CCAATGGAGG AACCTGGATG GAATTTATTA
AAAGAGAAAT TACCAGGTCA TTTACAATCT CGTTTTGTTT TTAGTAAAGG TAAAGTTATA
GTGCGTGGTT TAGGTGTTTT AAGTGCAGAT AAACAGCTAG AAAGTTTAAT AGAATGGTTA
AGTAAAATGG AGGGTGCAAT ACCAAAAAGT CAATTTAGGG AACAGGGAGA AGGTGGATCT
TGA
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| Protein sequence | MTLSSIIRLL GRSPLTTELL NKLQQYQCLG LNGASRLPKG LLTSTLAQQQ EQNLLIVTAT
LEEAGRWAVQ LEAIGWPKVH FYPTSEAFPY EPSNSEEMIW GQMQVLADLI SENVPENVTS
NGNSSNKAKM AVVATERSLQ PHLPTVKKFQ PYCLTLMASI ASSSKTLGST KISNTDIEIN
HSESDSLERP SLEEKLVQMG YELVPLVETE GQWSRRGDII DVFPVASELP VRLEWFGDEL
RQIREFDPST QRSLDKIAQI VLTPRDFSQW ALGNLESITD STFVSLLDYL PENTLIAIDE
PDQCAAHGDR WFELVEENWQ QLKRSQALPK IHRTFADSLA EAELFPRLYL SELTKETKSD
ITTSVPYTIN LASRPLPVIP HQYAKLAENL RQQRERKHSV FLISAQPSRS VSLLQEHDCP
AQFIPNSHDY PAIDKLQTQY TPVALKYSGL AELEGFILPT FRLSVITDRE FYGQHTLATP
TYIRKRRQAT SKQVNPNKLQ PGDHVVHRQH GIGKFVKLES LTLNNETRDY LTIQYADGLL
RVAADQLSSL SRLRSTDHKK PQLNKLTGKT WESTKNKVRK SIKKLAVDLL KLYAQRAQQT
GYSFPPDTPW QEEMEDSFPY QPTPDQLKAT QDVKRDMESE RAMDRLVCGD VGFGKTEVAI
RAIFKAVIAE KQVAFLAPTT VLTQQHYHTL KERFAPYPIE IGLLNRFRTP NEKKEIQHRL
ATGELDIIVG THSILSKTIQ FRELGLLVVD EEQRFGVNQK EKIKALKAEV DVLTLTATPI
PRTLYMALSG IREMSVITTP PPLRRPIKTH LAPYDLETAR TAIRQELNRG GQVFYVVPRI
EGIEELAGKL REMIPGARIN IGHGKMDAAE LESIMLTFSA GEADILVCTT IIESGLDIPR
VNTILIEDAQ KFGLSQLYQL RGRVGRAGVQ AHAWLFYPTT SSGGIALTDD AQKRLRAIQE
FTQLGSGYHL AIRDLEIRGA GDILGAEQSG QVNAIGFDLY TEMLEEAIRE IKGQEIPQVD
DTKIDLSLTA FIPADYILDL DQKISAYRSV AAANTREELS QIEVDWSDRY GAIPKAGLQL
LRMMELKQVA KKIGFSRIKV EGKQHVILET PMEEPGWNLL KEKLPGHLQS RFVFSKGKVI
VRGLGVLSAD KQLESLIEWL SKMEGAIPKS QFREQGEGGS
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