| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_1598 |
|---|
| Symbol | |
|---|
| ID | 4242980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 2446514 |
|---|
| End bp | 2447074 |
|---|
| Gene Length | 561 bp |
|---|
| Protein Length | 186 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 638106740 |
|---|
| Product | 2',5' RNA ligase |
|---|
| Protein accession | YP_721350 |
|---|
| Protein GI | 113475289 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1514] 2'-5' RNA ligase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.74538 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTCTAT CAAAATGTCT ATTATTTGTG GCTCTTGTGC CACCTGAAAA TATTCAAAAC
CAAGTTACCG AAATTAAGGA GTATTTTTCT CGGAATTATA ATAGTAGTCA TGCTTTAAAA
TCTGTGCCTC ATATTACTTT ACAACCTCCT TTTAAATGGC CGACTGAAAA TTTAACTCTT
TTGCAGGAGT CTTTAGAGGC TTTTACTCAA CATTGCTCTG CTTTTCCCAT TACTTTATCT
GGGTTTGCTG CTTTTGTGCC TCGTGTTATC TATATTAATG TTGTCAAGAC TCCAGAACTA
TTAAAAATTC AACGGGACTT AATTGCATTT ACAGAAACTA CTTTAGGAAT TGTACATCCC
CCTTCTAAAA TTCGCCCTTT TTCTCCTCAT GTTACTGTAG CTTTTCGAGA TTTAACTAAA
CAGAATTTTC GAGCGGCTTG GATAGAGTTT CGGGAGCGAT CGCTAGATTT GGATTTTACA
GCTTCTCAGT TAACTTTATT AATTCATAAT GGTAAGCGGT GGAATATTTG TAATGAGTTT
CCTTTTCTCA GTACAAATTA A
|
|---|
| Protein sequence | MGLSKCLLFV ALVPPENIQN QVTEIKEYFS RNYNSSHALK SVPHITLQPP FKWPTENLTL
LQESLEAFTQ HCSAFPITLS GFAAFVPRVI YINVVKTPEL LKIQRDLIAF TETTLGIVHP
PSKIRPFSPH VTVAFRDLTK QNFRAAWIEF RERSLDLDFT ASQLTLLIHN GKRWNICNEF
PFLSTN
|
|---|
| |