| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_1523 |
|---|
| Symbol | |
|---|
| ID | 4241710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 2313012 |
|---|
| End bp | 2314022 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 32% |
|---|
| IMG OID | 638106670 |
|---|
| Product | anti-sigma-factor antagonist and sugar transfersase |
|---|
| Protein accession | YP_721280 |
|---|
| Protein GI | 113475219 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor)
[COG2148] Sugar transferases involved in lipopolysaccharide synthesis |
|---|
| TIGRFAM ID | [TIGR00377] anti-anti-sigma factor
[TIGR03025] exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.229071 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0638325 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCAGCA AAATATCAGA AACATATTCA AAAAGAGATA TAGAAGTAAC TTTTAGGGAA
AAAATTCCTG TGATTAATTT GCCTCTTCGT TTTACTGTCT CAGAGGCAAA ATTATTTAAG
CTAACTTGCC AAGAACTTTT CTCTCAAGAG AAGACTACAA GTAAGATTAT TATTGATTTT
AGTCAAACTA ATTTTATGGA TAGTTGTGGT GTTGGCTCTT TGGTGACAAA TCTCAAGATA
GCAAGGAAAA AAGATATAGA TTTTATTCTT GATAATGTTA ATTCTCAGGT GATGAGTATA
TTTTACCTAA CTGAATTAGA TAAAATTTTT ACTATTGAAC AAACTAAACA AACAGAGATT
AAAGGTAGTT GGAAACCTGA AGAAAATCAA CTTCCTGTTA CTCATTCTTC TATTAAATCT
TTGGTAAAAC GCTTAATTGA TATTGTTGGC GCTTTGGTAG GATTACTTAT TACAGGTATT
TTGTTTATAC CAATAGCTAT TGCTATTAAG TTTGATAGTC CTGGTCCGAT ATTTTTTTGT
CAAATACGAT GTGGTTGGAT GGGAAGGCAT TTTCGAATGT GGAAATTTCG ATCTATGTGT
GAAGATGCAG AGCAACTTAA GGGTCAAATT AAAAATCAAG CTCAAGGTGC AATTTTTAAG
AATGAAAATG ATTCAAGAAT TACTAAAGTT GGTAGCTTTT TGAGGCGAAA GAGTTTGGAT
GAATTACCTC AGTTTTGGAA TGTATTAATA GGAGATATGA GTTTAGTTGG AACTAGACCT
CCAACTCCTG ATGAAGTAGA ACGTTATGAA ATTCCTCAAT GGCAACGTTT AGATGTTAAA
CCTGGCATGA CAGGAGAATG GCAAGTTAAT GGTCGTTCTC AAGTGAAAAA TTTTGAAGAT
ATTATTAGGT TGGACTTAAA GTACCAAAAG AATTGGAGTC TAATGTATGA TATAAAGTTA
ATTATTAGGA CTGTAGTAAT TCTATTCAAG AAAAGTAGTG GGGCCTACTA G
|
|---|
| Protein sequence | MVSKISETYS KRDIEVTFRE KIPVINLPLR FTVSEAKLFK LTCQELFSQE KTTSKIIIDF
SQTNFMDSCG VGSLVTNLKI ARKKDIDFIL DNVNSQVMSI FYLTELDKIF TIEQTKQTEI
KGSWKPEENQ LPVTHSSIKS LVKRLIDIVG ALVGLLITGI LFIPIAIAIK FDSPGPIFFC
QIRCGWMGRH FRMWKFRSMC EDAEQLKGQI KNQAQGAIFK NENDSRITKV GSFLRRKSLD
ELPQFWNVLI GDMSLVGTRP PTPDEVERYE IPQWQRLDVK PGMTGEWQVN GRSQVKNFED
IIRLDLKYQK NWSLMYDIKL IIRTVVILFK KSSGAY
|
|---|
| |