| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_1518 |
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| Symbol | |
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| ID | 4241705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Trichodesmium erythraeum IMS101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008312 |
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| Strand | + |
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| Start bp | 2306692 |
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| End bp | 2308485 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 31% |
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| IMG OID | 638106665 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_721275 |
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| Protein GI | 113475214 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02466] conserved hypothetical protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00971618 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGAACAGAG AACAAAAAAG AAAAGCAGTA AAAAATAAAA GTCAAAAAAT ACTCAATAAT
AATATCCCAG AAAATGCCTT ATATCGTGCT TTATCTTTTC ATAAAAACGG AGAATTGCAA
AAAGCAAAAG TTATCTATGA AAAAATTATT CAGTTGGAAC CAAATAATTC TCAAGTCTTA
AATTATCTGG GGGTACTTAA AGCACAAATG GGAGATAATA AGAGTGCTAT AAGTTTAATA
AAGAAAGCTG TTAATCTAGA ACCATTAAAT TTTAAATACC TCAATAATCT CGGCAATACT
TATCGCGCCT TTGAACAACT TGATAATGCT ATTGACTGTT ATAAACGTGC GATTCAGGCA
GATAAAAATT CTGCTGAATA TCACCTAAAC TTAGGTATTG CTTTGACCGA AAAAGGAATC
ATAGAAGAAG CGATCGCTTC CCTAGAAAAA GCTTTAACTA TTAATCCAAA TTATCAGCAA
GTTAACATGG CTCTAGGAGA TATATTTCAG ACTCAAGGGA AATTAGATAA AGCAATATCT
TCTTACATAA AAGCTCTCTC AATAGATCCA AAATATTCAA AGAATCAAAA TCCCAATAAT
TTTGATGCTC TATTATCTTT AGGCATGGCA CTTTATCGCC GTGGAAACCT CAAAGAATCA
CAAATAACTT ATGAACAAGC ATTAGAAATT AATCCTCATT CCACAGAATG CTTGACTAAT
ATTGCTGCTA CTTTTTATGA GCAGGGAAGA GTTGATATAG CTGAAGCTTG TTATCAAGCT
GTTGTTGATT TAATTCCTAC TTCTACTGAT GCTCATATAA ATTTGGGTTT TCTGTTAAGC
CAACAGGAAA AATATGACGA AGCAATTGAG TGTTATAAAG CAGCATTGAA GCAGGATCAA
AATTCTGTTA ATGCTATAGC AGGTCTAGCA GAAGTTTTCG GAAAAAAATC TGACTGGAAA
ACAGTCTTTC AACTATATCA AAAAATTCTG AAACTTGATT CTAACTCTGC TGATGCTTAT
GCAAAACTAG GAATATCTTT GCGAGAAATA GGTAAATCTA AAGAAGCAAT TCCTCAATTT
GAAAAAGCTA TAAGTATTAA TAATAGACAT ATTAAAGCTT ATGCTAATTT GGGTTTAGCT
TTGCAAGATG TAGGCAAACA GTCTGAAGCT AAATTTATTT TTGACTATTC AGAATTAGTA
GCTAAATACC AGTTTACTAG TATAGAAGGA TGGCAAAATT TGACAGCTTA TAATCATGAC
TTGAAAGATT ATATTGTTCG ACATCCTACT CTTTTAAAAA ATCGACCAGG CAAACCCATA
AATAAAGGTA GTCAAACTTA TGAAATTTTT ACAGATAATA CTCCTGTAAT AACAGCACTA
AGAAAAAAAA TTAATAGTTA TCTAGAAGAT TATTTTAGTC GTTTCACTTC TAATTCTAAC
TATCAATTTT TTCATAATAT ACCCTTAGAT TGGAAACTCA GTGGTTGGGC AGTTGTTTTA
GAATCAGAAG GATTTCAATC TTCTCATATT CATCCTGAAA GTTATTGCAG TGGCGTTTAT
TATATTCAAG TTCCTAATAC TATTAAAGAA AATAATTCTG AAGCAGGTCA CTTAAATTTT
GAAACTTGCT TTTCTTCAAA GTTAGATATG AAAAATTCAG ATAAATATCA GGTTAAACCA
CAAGCAGGAT TATTAGTAAT TTTTCCTTCT TATTTTTGGC ACTCTACTAT TCCATTTATT
GGAGATAGTG AGAGAATTTG TATTTCGTTT AATATGGTTC CTGTGAGTAG CTAA
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| Protein sequence | MNREQKRKAV KNKSQKILNN NIPENALYRA LSFHKNGELQ KAKVIYEKII QLEPNNSQVL
NYLGVLKAQM GDNKSAISLI KKAVNLEPLN FKYLNNLGNT YRAFEQLDNA IDCYKRAIQA
DKNSAEYHLN LGIALTEKGI IEEAIASLEK ALTINPNYQQ VNMALGDIFQ TQGKLDKAIS
SYIKALSIDP KYSKNQNPNN FDALLSLGMA LYRRGNLKES QITYEQALEI NPHSTECLTN
IAATFYEQGR VDIAEACYQA VVDLIPTSTD AHINLGFLLS QQEKYDEAIE CYKAALKQDQ
NSVNAIAGLA EVFGKKSDWK TVFQLYQKIL KLDSNSADAY AKLGISLREI GKSKEAIPQF
EKAISINNRH IKAYANLGLA LQDVGKQSEA KFIFDYSELV AKYQFTSIEG WQNLTAYNHD
LKDYIVRHPT LLKNRPGKPI NKGSQTYEIF TDNTPVITAL RKKINSYLED YFSRFTSNSN
YQFFHNIPLD WKLSGWAVVL ESEGFQSSHI HPESYCSGVY YIQVPNTIKE NNSEAGHLNF
ETCFSSKLDM KNSDKYQVKP QAGLLVIFPS YFWHSTIPFI GDSERICISF NMVPVSS
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