| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_1511 |
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| Symbol | |
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| ID | 4242971 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Trichodesmium erythraeum IMS101 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008312 |
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| Strand | - |
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| Start bp | 2294607 |
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| End bp | 2296907 |
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| Gene Length | 2301 bp |
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| Protein Length | 766 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 638106659 |
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| Product | RNAse R |
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| Protein accession | YP_721269 |
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| Protein GI | 113475208 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.193382 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTTT CCATCGCTAC ACTCTTAGCA AATTTCAGTG ATGACAAATT AATCGCTCCC
AAAGCAGTGG AGAAAAAACT AGATTGTCAA GACGACCAAA GTATCAGAAA ATTACAAATT
GCCTTGGATG CTCTCGAAAG AATAGGAGTT CTCGCTAAAG ACAAAGGTCG CTATCGGCGA
CTTTTTGAAG AGGCACTTGT AGAAGCAAAA CTACGTTGCT CTAGTAAAGG ATTTTGCTTC
GCGATACAAG ACTTAGAAGG AACAGAAGAT ATTTACATTC GCGAGAGTCA TCTGAGCAAT
GCTTGGAATG GCGATCGCGT CTTTGTGAAA ATTATCAAAG AAGGAAGTCG TCGCCGGAGT
CCGGAAGGAG AAGTCAAGCT AATATTAGAA CGTGCAAACC CTTCCTTATT AGCAAGAATC
AAGCAAATAA ATGGGCAGAA TGGAGACCCC TACTATAGAG CAGTTCCCCT AGATGATCGC
TTACTATTTG AACTTGACTT AGTACCAGAA GGTCCAGACT TAGCAGATGC TATAGACCAC
CTAGTCCATG TTGAAGTATT GCGCTACCCC CTAGGAGAAA AACGTCCCAT TGGAAAAGTA
GTTCAGATTC TTGGTTCAGA TGCAGAAGCA GCAGATGACT TAGACATAGT ATGTTGTAAA
CATGATTTAC CCCGGTCTTT TCCAAATACA GTTCTTAAAG AAGCGGAGTC TCTAGTCAGC
CACTCTACCA AAGCAGATCA AAAAAATAGA CTAGATTTGC GTGAACTGCT CACAGTTTCT
TTTGGAGAAC TAGAAAAAAA AGATATTAAC CATGCTCTGA GTATAGAAAC CACAACCTCC
GGTTATTGGC GAGTAGGAGT TCACATTGCT GATGTAGCCT ATTTTATTAA AGTAGATTCC
CCCCTAGATA AAGAAGCTCG TAAGCGAGCT ATCAGCATAT ACCTGCGAAA TGAAGTAGTT
CCTATATTGC CAGACGGACT ATCAAGTGAT TACTTTTCCT TACTACCAAA AAAAGATCGA
CTAGCTATAT CTATTTTGAT AACTGTCAAT AAAAACGGTC AGATAGTTGA GTTTGAGATT
GAACCTAGTG TGATCCAGGT AAATGTTCAT CTCAGCTACG AGCAAACCAA AAAAATTATT
AATGGCAATA CGGATGGATT AGTTGACATT AACTTAGAGC AACTGGAAAA TACCATCAAT
AAGCTTCAAG ATGTTAGTCA CGCAGTCCGA AATGCCAGAT TACGAAGAGG TGCTTTTGAC
CTAAATTTAC CAGATGAAAA AAGCTACTAC AACGATGAGA GTCCTTTGGG AGCAATGATA
ATTCCTAATA TCTTTCAAGC TCGTTCCATG GTAGCAGAAT TGATCGTTCT GGCCAACCAA
GCAATAGCTA GTCACTTGTT AGCATTAGGA GTACCTGCAA TTTATAGAGT CCAAAATTCC
CCAGAACCAG GAGATATTCA AGAATTTATT AAACTAGCTA GTCATCTTGG ATCTGAGTTA
TATCTAGAAG ATGAAGAATA CCTACAACCT GCTGACTATC AAGCATTTGT TGAGGAATTT
ACCACATCAA AATCAGAAAG AGTACTGACA TACTTGCTCG AAGATACTTT GAAACCTGCA
ATTTACAGTA CCACAGCTCA ACCTCATTTT GGATTAGCTT TACAACATGG TTATGTTCAT
TGTACATCTC CAATTTCAAG ATATTCCGAT TTATTGATTT CACGAGTATT ACATACTGTA
TTTAATGAGG GTCGCGATCG CCGTTCTAGT CGTTCTAAAG AAGGTGTAGA GCTGGGACAT
TCTTCATGTC ATGGCAAAAT CTCCTGGAAT GTTCTAGCTC CAGAAATACA GCAAGAATTG
GAAGCACAAT TAACTTCAGT AGTCGTCCAT TTAACGGAAC GAGAAAACAT AGCACAAGAT
GGCCAAGAAG ATTTAGAAGG ATTAATTAAA ACTGGATTAA TGAAAGAACG TACTGGTCAA
ACTTTCCCAG GTTTAATTAC TGGGGTACAG TCTTACGGTT TCTTTGTAGA AATTGAAATT
TCCTCTGAGT CTACACAAAC TTTCAGAGTA GAGGGTTTAG TTCATGTATC TTCTCTGAAA
GATGATTGGT ATGAATATCG TTCCCGACAA CAAACACTTG TTGGACGCAA AAATCGTAAC
CAGTATCGAT TAGGGGATAT AGTAGAAGTA CAGGTCAAGA GTGTTGATTA TTACCGCCAG
CAAATTGACT TAGTTGCAGT TAGTGGGGGC AGTACTGCTT TTGACGATGA AGAGTTCTCC
TCTAATCCTT ATCGGTTCTA A
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| Protein sequence | MKFSIATLLA NFSDDKLIAP KAVEKKLDCQ DDQSIRKLQI ALDALERIGV LAKDKGRYRR
LFEEALVEAK LRCSSKGFCF AIQDLEGTED IYIRESHLSN AWNGDRVFVK IIKEGSRRRS
PEGEVKLILE RANPSLLARI KQINGQNGDP YYRAVPLDDR LLFELDLVPE GPDLADAIDH
LVHVEVLRYP LGEKRPIGKV VQILGSDAEA ADDLDIVCCK HDLPRSFPNT VLKEAESLVS
HSTKADQKNR LDLRELLTVS FGELEKKDIN HALSIETTTS GYWRVGVHIA DVAYFIKVDS
PLDKEARKRA ISIYLRNEVV PILPDGLSSD YFSLLPKKDR LAISILITVN KNGQIVEFEI
EPSVIQVNVH LSYEQTKKII NGNTDGLVDI NLEQLENTIN KLQDVSHAVR NARLRRGAFD
LNLPDEKSYY NDESPLGAMI IPNIFQARSM VAELIVLANQ AIASHLLALG VPAIYRVQNS
PEPGDIQEFI KLASHLGSEL YLEDEEYLQP ADYQAFVEEF TTSKSERVLT YLLEDTLKPA
IYSTTAQPHF GLALQHGYVH CTSPISRYSD LLISRVLHTV FNEGRDRRSS RSKEGVELGH
SSCHGKISWN VLAPEIQQEL EAQLTSVVVH LTERENIAQD GQEDLEGLIK TGLMKERTGQ
TFPGLITGVQ SYGFFVEIEI SSESTQTFRV EGLVHVSSLK DDWYEYRSRQ QTLVGRKNRN
QYRLGDIVEV QVKSVDYYRQ QIDLVAVSGG STAFDDEEFS SNPYRF
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