| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_1173 |
|---|
| Symbol | dapF |
|---|
| ID | 4244057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 1833837 |
|---|
| End bp | 1834673 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 638106394 |
|---|
| Product | diaminopimelate epimerase |
|---|
| Protein accession | YP_721006 |
|---|
| Protein GI | 113474945 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0253] Diaminopimelate epimerase |
|---|
| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.16632 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0076294 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAT CATTCACTAA ATATCATGGT CTAGGGAACG ATTTTATTTT GATTGATAAT
CGCCACCAAT TACAGCCTAT ACTAACACCA GAACAAGCAA TAGAATTGTG CGATCGCAAT
TTTGGTATTG GTGCAGATGG TGTAATTTTT GCTCTACCTG GAGTGAAGCA AACTGATTAT
ACCATGCGGA TTTTCAATTC TGATGGTTCA GAGCCTGAAA TGTGTGGAAA TGGGATTAGA
TGTTTAGCTA AGTTTATAGC AGAACTAGAA AACAATAACA AGACTAAATA TAATATCCAT
ACCGGTGCCG GTATAATTGT TCCTGAATTG CAAGGTGATG GTCAAGTAAC AGTTGATATG
GGACAACCCA GACTTTTGGC ATCGGAAATA CCGACAACTT TAGCTAATGC TGATGATAAA
GTTGTGGATC AACTCTTAGA AGTAGGTGGA AAGTCTTGGT TTGTTACCTG TGTGAGTATG
GGAAACCCCC ACTGCATAAC TTTTGTAGAA GATGTTACTG CTATAGATTT AGCTAAAATA
GGTCCTAAAT TTGAACATAA CCCAGTATTT CCAGAACGTA CTAATACAGA ATTTATTCAA
GTTATTAGTC CAAAATATGT GAAGATGCGA GTATGGGAAA GAGGAGCTGG TGCAACACTT
GCTTGTGGTA CAGGAGCATG CGCGTCAGTT GTGGCAGGAG TTTTAACTCA AAATAATGAG
CGCTTAGTTA CAGTAGAGTT ACCTGGAGGT TGTTTGGAAA TTGAATGGTC AACTATAGAC
CAAAAAATTT ATATGACTGG ACCGGCAGAA AAAGTATTTA CAGGAATCAT AGCATAA
|
|---|
| Protein sequence | MTKSFTKYHG LGNDFILIDN RHQLQPILTP EQAIELCDRN FGIGADGVIF ALPGVKQTDY
TMRIFNSDGS EPEMCGNGIR CLAKFIAELE NNNKTKYNIH TGAGIIVPEL QGDGQVTVDM
GQPRLLASEI PTTLANADDK VVDQLLEVGG KSWFVTCVSM GNPHCITFVE DVTAIDLAKI
GPKFEHNPVF PERTNTEFIQ VISPKYVKMR VWERGAGATL ACGTGACASV VAGVLTQNNE
RLVTVELPGG CLEIEWSTID QKIYMTGPAE KVFTGIIA
|
|---|
| |