| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_0880 |
|---|
| Symbol | |
|---|
| ID | 4245543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | - |
|---|
| Start bp | 1395950 |
|---|
| End bp | 1399156 |
|---|
| Gene Length | 3207 bp |
|---|
| Protein Length | 1068 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638106143 |
|---|
| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
|---|
| Protein accession | YP_720755 |
|---|
| Protein GI | 113474694 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium)
[TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.288102 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.231109 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTACAA ATTTTTTCAT CAAAAGACCA GTATTTGCCT CAGTGTGTTC CCTACTAATT
ATCCTAATTG GATTAGTCGG TTATATCAGT CTACCAGTAC AAGAATTTCC TAGCATTGAT
ACCCCAGTAG TCAGTGTACG AACCAACTAC CCAGGAGCTA GCCCAGAAGT AGTAGAAACA
GAAGTAACAG AAATTCTGGA AGCAGAAATT AATGGTGTTG AAGGTGTGAA AACTCTGACA
TCTAGCACCA GGGAAGGTTC AAGTTCCATA AACGTTGAAT TTCAACTGAG TCGCAATATA
GAAGCAGCAG CTCAAGATGT TCGTAGTCGT GTCTCCCGTG CCATGAGAAG ACTTCCCAAT
GAAGTTGATG CACCAGTAGT TTCTAAACGA AGTAGCGATG AAGAAAGAAT TATTTGGCTT
TCCCTAACTG GGGAAAAATA TTCATCATTA GAATTAAGCA ACTATGCCGA TAAATTCATT
AAAAATATCT TAGAAACTGT TAATGGAGTG GGTAGTGTTT TTATCGGAGG CGAACGTCGT
TACGCCATGC GACTATGGTT AAACCCCCAA AAAATGGCTG CTCGAAATAT TACTGCTTTA
GATGTCAAAC AAGCTCTTAG ACAACAAAAC GTAGAAATTC CCAGTGGTAG AATAGAAGGA
AAATCTACAG AATACCCCAT CCGCACTATT GGTCGTCTAC AAACACCAGA AGCTTACGAA
AACTTGGTGA TCAGACGCAA TGATGACACC TCTCTGACAA GATTCAAAGA TATTGGTAGA
GCAGAAATTG GAGCAGAAAG TAATCGCACA ATTGCTCGCT ATAATGGTAA ACCAGCAATA
GGTATTGGAA TTAGTAAGCT TTCCGGAGCA AATATCATAG AAGTTGCCAC AAGTGTCAAA
ACTAGGATGA AAGAATTATC TAAAGATTTT CCCGATGGAA TGGAATACTA CGTCAGCGTT
GACTACTCAA CATTTGTGGA AGTTGCCATC AAAGAAGTCT GGAAAAGTTT GCTATTCGCC
ATCTGTTTAG TTGTCTTAGT TATCTATATG TTTTTGCAAA ATTGGCGGGC AACAATTATT
CCTACTATCA CCATTCCCAT TTCCCTCATT GGTGCCTTTG GGGTAATGTT TTTCATGGGA
TTTTCTATCA ACACTCTCAC CTTATTTGCT CTAACACTTT CAACAGGTTT GGTAGTAGAT
GATGCTATTG TGATCTTAGA AAATATTGTT CGATATATTC AACAGAAAGG CAAAACTCCC
ATGGAAGCTG CAATATTAGG AGTCGGGGAA GTTGTATTTG CTGTCATTGC CACAACCATT
GTCTTAATTG CAGTATTTCT ACCTGTAGGA TTTTCCGGTG GGGGTGCAGG GCGAATATTT
AATGAATTTG CCCTAACTAT TGCAGTGTCA GTAGTGTTTT CTACCTTTGT TGCTCTGACA
TTAGCACCAT CATTGTCAGG GCGAATTCTT AAAAAACAAG AACCAGAGGA ACAAAAAAAT
TTTATCTCTC GTTTATTTAC CATTCCCCTT AATTTATTTG ATTATGCTCT CAGTCGCATT
TCAGTAATAT ACGATCGCTC ATTACGTCTG TTGATGAGAA TCAAACCATT AGTAATTTTA
GGATTTATCC TATCTTTTTG GATAATAGTT TGGTTATTTC AACAGTTGCC CCAAGGATTT
TTGCCCACAG AAGATCGCGG AAGAGTATTT GTTTCTGTAA CTGCACCAGA AGGGGTAAGC
ATTGAATATA CTGACAATGT CATGGGTCAG GTAGAAAATA AACTTGCTCA AGTTCCCGAA
ATGAAAGGTT ATTTCAGTAT TACTGGGTTC GGTCGTTCAG CTCAAGCTAA CCGAGCTTTT
GCTTTCACCA ACTTGAAACC CTGGTCAGAA CGGACAAAAC CAGGGCAAGC ACAACAAGAA
GTTGTCAAAA AGTTATTTAG AGCATTTGCA CCAATTACAG ATGCACGAAT ATTTCCAATT
AATCCTGGTT CATTACCTGG TACTGGTCTT AGTCGCTCCA TACAGTTTGT CTTGCAGGGA
AATGATTTTG AAGAGTTAGT GCGAGTATCT GAAGAATTTA ACAATGAGGC GCAACAGTTA
CCCCAACTAA AAAATGTTGA CACAGATTTA AAAATTAATA AGCCTGAGAT CGTAGTAGAA
ATAAATCGTT ACCAAGCTGC TAATTTAGGG ATATCGGTAG AGAATATTGC TCAGACATTA
CAAATTATGA TGGGTGGGGA AGATATTACG AATTTTACTC AAGGAAACCA GCGCTATGAT
GTAATTGTGC GGGCTGAGGA TGAGTTTCGC AATAATCTCC AAGATATTGA GGATCTATAT
GTGCGAACTG AGCAAGGGGT GATGATACCT TTGAGTAATG TGGTGACTGT GAAGACAAGC
ACAACTCCTC CTGAGATTAA TCATTTTAAC CGCTTTCGTT CGGCAACAAT TACAGGAAGT
CCGGCTCCAG GAGTTAGTTT GGGTGAGGCA TTGCAAGCAT TATACGATTT GGCGGATCGG
GTTTTACCTG CTGATATGCG GATAGATCTA AAGGGTGAGT CATCCCAGTT TCGAGATGCT
GGTCAGGCAA CGACATATAT TTTTGGGTTG GCATTAATTT TTATTTTCTT AACTTTGGCA
GCTCAGTTTG AGAGTTATAT CGACCCGCTG GTGATTTTAT TGTCGGTACC TTTATCTTTG
TTGGGTGCTT TTGGGGCGTT ATGGTTGGCA GATTTAGAGG TGAATGTTTA CAGTCGTATT
GGGTTAATTA TGTTAATTGG TTTGGCAACT AAGAATTCAA TTTTGATTGT GGAATTTGCT
AACCAGTTAT TGGCAGAGGG AATGTCTATT ACTAAAGCTG CTATTGAGGC ATCGCGGTTG
CGGTTTCGTC CGATTTTGAT GACAGGGTTT TCGACAATTT TTGGGGTGAT GCCCTTGGCG
TTTGCTTCTG GTCCAGGCGC TGCTAGTCGG GTTTCCATCG GAATGTCGGT TATGGGTGGA
ATGTTGGTGT CTACAGTTTT GACTTTGTAT GTAGTGCCTG TGTTTTATGT GGTGATGGGG
AAGAGTTTGC AGTTCGGTTT ATTTCGTAAG CATGCTCAAT ATTCGGCAGA TGGTGATGAG
ATTAGTAATG GTTCTGTTAA TGGAAATAGT AAAACTGCTC CTGTTAATGA TAAAAATCAG
GATAGTGCGG AAAAATTGAG CAGGTGA
|
|---|
| Protein sequence | MFTNFFIKRP VFASVCSLLI ILIGLVGYIS LPVQEFPSID TPVVSVRTNY PGASPEVVET
EVTEILEAEI NGVEGVKTLT SSTREGSSSI NVEFQLSRNI EAAAQDVRSR VSRAMRRLPN
EVDAPVVSKR SSDEERIIWL SLTGEKYSSL ELSNYADKFI KNILETVNGV GSVFIGGERR
YAMRLWLNPQ KMAARNITAL DVKQALRQQN VEIPSGRIEG KSTEYPIRTI GRLQTPEAYE
NLVIRRNDDT SLTRFKDIGR AEIGAESNRT IARYNGKPAI GIGISKLSGA NIIEVATSVK
TRMKELSKDF PDGMEYYVSV DYSTFVEVAI KEVWKSLLFA ICLVVLVIYM FLQNWRATII
PTITIPISLI GAFGVMFFMG FSINTLTLFA LTLSTGLVVD DAIVILENIV RYIQQKGKTP
MEAAILGVGE VVFAVIATTI VLIAVFLPVG FSGGGAGRIF NEFALTIAVS VVFSTFVALT
LAPSLSGRIL KKQEPEEQKN FISRLFTIPL NLFDYALSRI SVIYDRSLRL LMRIKPLVIL
GFILSFWIIV WLFQQLPQGF LPTEDRGRVF VSVTAPEGVS IEYTDNVMGQ VENKLAQVPE
MKGYFSITGF GRSAQANRAF AFTNLKPWSE RTKPGQAQQE VVKKLFRAFA PITDARIFPI
NPGSLPGTGL SRSIQFVLQG NDFEELVRVS EEFNNEAQQL PQLKNVDTDL KINKPEIVVE
INRYQAANLG ISVENIAQTL QIMMGGEDIT NFTQGNQRYD VIVRAEDEFR NNLQDIEDLY
VRTEQGVMIP LSNVVTVKTS TTPPEINHFN RFRSATITGS PAPGVSLGEA LQALYDLADR
VLPADMRIDL KGESSQFRDA GQATTYIFGL ALIFIFLTLA AQFESYIDPL VILLSVPLSL
LGAFGALWLA DLEVNVYSRI GLIMLIGLAT KNSILIVEFA NQLLAEGMSI TKAAIEASRL
RFRPILMTGF STIFGVMPLA FASGPGAASR VSIGMSVMGG MLVSTVLTLY VVPVFYVVMG
KSLQFGLFRK HAQYSADGDE ISNGSVNGNS KTAPVNDKNQ DSAEKLSR
|
|---|
| |