Gene Tery_0878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTery_0878 
Symbol 
ID4245424 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTrichodesmium erythraeum IMS101 
KingdomBacteria 
Replicon accessionNC_008312 
Strand
Start bp1391421 
End bp1393301 
Gene Length1881 bp 
Protein Length626 aa 
Translation table11 
GC content39% 
IMG OID638106141 
Product1A family penicillin-binding protein 
Protein accessionYP_720753 
Protein GI113474692 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.209414 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.32606 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTACG GTGGGTGGAT GTGGCGAAAA TTAGAGCAAA GCTTACCAGA AGTTGCCGAT 
ATTTCCTCCT ATAGAAGAGA TGGTACTTTA ACGATCAAAG CTACAGATGG TAAAATTATA
CAACAAACCG GACCTGCCAC TCGAGAAAAA ATTAAATTAC AAGATATTCC TACTCCTTTA
GTTCAAGCTT TTATTGCTGT TGAAGACAGA CGTTTCTATG AACATAGAGG AGTTGATTAT
CCAGGAGTTA TTCGAGCATT TATATTGAAT ATAATTGCTA GAGATATAGT TCAAGGGGGT
AGCACTATTA CCCAACAGTT AGCACGGATG GTTTTCCTTG ATATGGAACA AAGTATTTGG
CGTAAACTTC GGGAAGCAAT GCTAGCTTGG AAAATAGAAA ATGAGCTATC TAAAGAAGAA
ATTCTAGAAT TATATCTAAA TATAGTTTAT CTGGGGTCAG GTACTTATGG AGTCGCTGAT
GCAGCCTGGG TTTACTTTAG CCAACCAGTT TTCGGACTAA CTTTAGCACA AATGGCAACT
TTGGCAGGTT TGCCTCCTGC ACCCAGTCAA TATTCACCTT TGGTTAACGA AGAAGCTGCT
AAACGTCGGC GAAATCTAGT ATTAAAAGAA ATGCAAGCAG CAGGTTTGAT TTCTGATGAG
CGAACAAAAA GAGCGATCGC TCAACCAATG AAAATAAAAC CTAGTGCGCC AAAACGTCTC
ATAGTTGAAG CTCCATATTT TGCTAACTAT ATTCAGAAAG AGTTACCGAA ATATGTTTCC
TCAGAAGTTA TAATGGCAGG AGGTTTAACT GTAGAAACTA CTCTGGATAG GCGTTGGCAA
GAAATAGGGG AAAAAGTAAT TCAAGAAGCT GTTGATATTG ATGGTTATCG TCAAAGGTTT
GACCAAGCAG CATTAGTCGC TATTGATGCT AATACTGGAG AGGTTAAGGC GTTAGTAGGA
GGTCGAGATT TTGCTAAGAG TGAATTTAAC CGAGCTATTC AAGCGCAACG TCAACCAGGT
TCAACTTTTA AAAGTTTTGT CTATGCTGCT GCGGTTGCTG CTGGTATTCC TCCGACTAAT
GGTTATCGAG ATTTACCGTT TACAGTAGAT GGTTATAAAC CCAAAAATTA TGGTAAAAAG
TATGGTGGTT GGCGATCAAT GATTGATTCT TTGGCATATT CTGTAAATGT GGTGGCAGTG
CAGGTGTTGA TAGATGTAGG GTTTGAACCT GTGATTAATT TAGCTAAGGA TATGGGGATT
AAATCTGAGG TTAAGGCTAC TTATTCTATG GCGTTGGGTA GTTGGGAGGT TAATTTATTA
GAGCTGACAA ATGCTTATGC GACTTTTGCT GCACAGGGTA AGTATATTCC AGCTCATGGA
ATCAAAAAAG TAATTAATCA AAACGGTAAG GTTATCTATG AGAGTAATTT TAAACCAAAG
CAGGTGTTAG ATAAGGATAG TGCGGCAATT GTTACCTGGA TGTTGGAGAA TGTGGTGAAA
TATGGTAGCG GAGCGAATGC TTATTTGTCT GATCGCCCTG TTGCAGGTAA AACTGGTACG
ACTGAAGAGG CCCGAGATTT GTGGTTTATT GGTTATATTC CCCAAGTGGC AACTGGAATT
TGGTTTGGTA ATGATGATAA TAAACCTACT TGGGGTGTGA GTAGTACAGC AGCTTATAAT
TGGCAACAGT TTATGAGGAA AGTAGCTAAA GATATACCTG TGAAAAATTT TCCGAAAAAG
CCCAGTTTTT ACGATCGCAA ACCTACTATT GAATCTAAAC CAGTGACACC AAGATGGACT
AGGTATGGGA ATGTTGGGCC TGATGGTAGG GAGTTAGAAA AAAGAAATTA TTATAGAGAT
TATTATGATG GGAGTTATTA G
 
Protein sequence
MIYGGWMWRK LEQSLPEVAD ISSYRRDGTL TIKATDGKII QQTGPATREK IKLQDIPTPL 
VQAFIAVEDR RFYEHRGVDY PGVIRAFILN IIARDIVQGG STITQQLARM VFLDMEQSIW
RKLREAMLAW KIENELSKEE ILELYLNIVY LGSGTYGVAD AAWVYFSQPV FGLTLAQMAT
LAGLPPAPSQ YSPLVNEEAA KRRRNLVLKE MQAAGLISDE RTKRAIAQPM KIKPSAPKRL
IVEAPYFANY IQKELPKYVS SEVIMAGGLT VETTLDRRWQ EIGEKVIQEA VDIDGYRQRF
DQAALVAIDA NTGEVKALVG GRDFAKSEFN RAIQAQRQPG STFKSFVYAA AVAAGIPPTN
GYRDLPFTVD GYKPKNYGKK YGGWRSMIDS LAYSVNVVAV QVLIDVGFEP VINLAKDMGI
KSEVKATYSM ALGSWEVNLL ELTNAYATFA AQGKYIPAHG IKKVINQNGK VIYESNFKPK
QVLDKDSAAI VTWMLENVVK YGSGANAYLS DRPVAGKTGT TEEARDLWFI GYIPQVATGI
WFGNDDNKPT WGVSSTAAYN WQQFMRKVAK DIPVKNFPKK PSFYDRKPTI ESKPVTPRWT
RYGNVGPDGR ELEKRNYYRD YYDGSY