| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_0812 |
|---|
| Symbol | |
|---|
| ID | 4241775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 1287239 |
|---|
| End bp | 1289170 |
|---|
| Gene Length | 1932 bp |
|---|
| Protein Length | 643 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 638106089 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_720701 |
|---|
| Protein GI | 113474640 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3264] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.459246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAGAC TTCAGAAATA TAAGTTGAGA TTTGCCCTTG TAGTTAGCAT CAGTTTACTA
TTAGTATTTC TACTCTTTCC TGTCCAAGCT AAAGATACAA CCAGTGTCAA AGTTCCAGTA
GTATTAGATG GTCGAGAATT GTTAGAAGTT GGTGCTTTAG GAAAACTGAC AGCTCAGGAG
AGAGCTAAAT TTACGACATC AATTCTCAAG TCAGCCTTAG CAGATAGTAT TGAACGAGGA
ACACCTCCAG ATGTGAAAGT GGTTCGCTCT AATCAAAATG TGCTATTGAA AGTCGATAGT
CGCCCCTTAG TGGAGATAGC AGAAGATACC TTCAACTCCA TGTACTCCGA AATGCAGGTG
CAAATGTGGC AGAAACAACT GCAGCAGGGT TTGGAAAAAA GTTGGCGGGA ACGCACACCA
GCTTATACCC GTTGGGCAGT CAAAATGCTG ACTATTGCGT TTTTAATTAC TCTGTTGCTT
CAGGGGGGAC TCGTATTGCT GTTTCGTTAT GTTCTACGCC AGAAGATAAA AAATCCTCAC
AGACGCGGGG GTTCTTTACG ACTATTAGGT TTGGTATTAT TGCAAATAGC AATATGGGCG
ATATTTATCA ATTATGGAGT TCAATTATTT CCCATCACTA GAGGCTGGTT TTACGAGATT
TTTCAACTTT TAGACAATAC ATTTAATGCC AGAATGTTTC AGTTGGGAGA AGAAACCATT
TCTCTCAACC GAATATTAAC TATCGCCCTC ACTATCGCTG CACTTTGGAT CGGAGTAGGT
TGGCTTGTTA GTATCCTCAA ATCTCGCTTG CTTCCCCTCA CAGGAGCAGA AACCAGTCAC
CAAGATACAA TTGCTTTTTT TCTTCAATAC GGACTGCTAT CCGTAGGAGC ACTCCTAATT
CTCAATGCTG GAGGGGTAGA TTTTCAATCT CTAGCTCTCT TACTGGGAGC CCTTGGAGTT
GGTATTGGTT TTGGATTACA AAATATTGTT AAAGACTTCA TTTGTGGGTT AATTTTAATT
GTTGCCCGTC CGATAAAAGT TGGAGAGTTG GTTCAGGTAG GAAATTTTCA AGGTTTAGTT
CAACGCATCG GTGCTAGAAC TACTGATATT TCTAATGTCG AACGCTATAT TATTACTATT
CCTAATTCTC GCTTTATTGA AGGGGAAGTT CTCAACTGGA ACCGCAGTGG TATAACTAGA
GTAAAAGCTT ATGTGAAAAT TCCTTATGGA ACAGATATTG ATTTTGTCTA CAAAGTTCTA
CTTGCTGCGG CACAAGTGGA ACATCCAGAT ATTCTCCGCC ATCCTCCACC CAAAGTAAAA
TTTCGGGAAT ATGTAGAGAA TGGGTTGCAG TTTCGGATGG TGGCTTTTAT CCGCGATCCT
CTTAAGCAAC TAGAGGTGAG AACCCACCTG TACAAACAAA TAGAAAAATA TTTACGAAAG
TATGGAGTTG AAGTTGCTCG CCGCCGACAA GATATACATC TCAAAGACCT CGATCCTGAA
ATCTATGGTG GAGAGCGATC GCAAACTTCT GCAGAAGATC GACTTCTTTC TCAAGAGATG
CTATCTATTG AACCACCATC TATTAAAGAA GAGTACGACT GGGAGGCGAT ATCTACTGCC
ATGGGTGGAG AGAATGGAGT TTCTATCAAA GATAGACGGT TTCACTTTAA GATCTTCAAA
AATGTCTTTT TAGGTTCGGA GGCAGTAGAG TGGTTAATGA TTAATGAACG AGCTACTAGG
GAAGAAGCTA TTCTGATGGG GGAGTTAATG TTGCAACAGG GGATAATTCA CCACGTTTTG
GATGAACATA ATTTTAAGGA TGAGCCTCTT TTTTATCGCT TTTATAATCA TGAAGTTGAA
GCCAATATTA ATACTAATGC TAATGGCTCG GAGCATGGAA TTGATTCAAA GTTACAAGAT
GATGCTGAAT AA
|
|---|
| Protein sequence | MARLQKYKLR FALVVSISLL LVFLLFPVQA KDTTSVKVPV VLDGRELLEV GALGKLTAQE
RAKFTTSILK SALADSIERG TPPDVKVVRS NQNVLLKVDS RPLVEIAEDT FNSMYSEMQV
QMWQKQLQQG LEKSWRERTP AYTRWAVKML TIAFLITLLL QGGLVLLFRY VLRQKIKNPH
RRGGSLRLLG LVLLQIAIWA IFINYGVQLF PITRGWFYEI FQLLDNTFNA RMFQLGEETI
SLNRILTIAL TIAALWIGVG WLVSILKSRL LPLTGAETSH QDTIAFFLQY GLLSVGALLI
LNAGGVDFQS LALLLGALGV GIGFGLQNIV KDFICGLILI VARPIKVGEL VQVGNFQGLV
QRIGARTTDI SNVERYIITI PNSRFIEGEV LNWNRSGITR VKAYVKIPYG TDIDFVYKVL
LAAAQVEHPD ILRHPPPKVK FREYVENGLQ FRMVAFIRDP LKQLEVRTHL YKQIEKYLRK
YGVEVARRRQ DIHLKDLDPE IYGGERSQTS AEDRLLSQEM LSIEPPSIKE EYDWEAISTA
MGGENGVSIK DRRFHFKIFK NVFLGSEAVE WLMINERATR EEAILMGELM LQQGIIHHVL
DEHNFKDEPL FYRFYNHEVE ANINTNANGS EHGIDSKLQD DAE
|
|---|
| |