| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tery_0792 |
|---|
| Symbol | |
|---|
| ID | 4243203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Trichodesmium erythraeum IMS101 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008312 |
|---|
| Strand | + |
|---|
| Start bp | 1258410 |
|---|
| End bp | 1260767 |
|---|
| Gene Length | 2358 bp |
|---|
| Protein Length | 785 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 638106072 |
|---|
| Product | (NiFe) hydrogenase maturation protein HypF |
|---|
| Protein accession | YP_720684 |
|---|
| Protein GI | 113474623 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0068] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00143] [NiFe] hydrogenase maturation protein HypF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAAA TAGCAGAACA AATTCGTATC TATGGCACTG TCCAAGGTGT AGGTTTTCGC
CCTACAGTCT ACCGCATTGC TAAAACATTA GGGTTGTGCG GTGAAGTTAG TAATGATGGG
CAAGGTGTTT TAATTAAAGT TGTAGGCGAT CGCTCGACTA TTGACCAGTT GATCGAAAAA
ATACATTCTG AACGCCCTCC ACTTGCCGAT ATCGAAACCA TTACCCGACA GCACTTGGAA
AATGCAAATT TCCTAGATTT TATCATTACC TCAAGCAACA ACAACAGCGT TCGTACCAAA
ATAGCACCCG ATGCTGCAAC CTGCTCCAAC TGCAAACATG AAATCCTTGA CCCTTTGAGT
CGTTGGTATC GCTACCCATT TACTAACTGT ACCCACTGCG GACCCCGCTT CAGTATTACT
AAAAAATTAC CTTATGATCG CAAAAATACA ACTATGGCAG ATTTTAACTT TTGCCCAGAA
TGTCAGGAAG AATATTCCGA TCCCCTTAAC CGTCGCTTCC ACGCTCAACC TATTGCCTGT
CATGTTTGTG GACCGAAAGC TTGGTTAGAA AGAGCAGATG GTAAACCAGT CACTGCTGAT
ATGTTCTCAA TGTTAGATGA TGTGGATGCG CTCTGTACTC TGATCCAACG AGGAATGATA
GTTGCTGTCA AAGGCTTAGG TGGCTTTCAC CTTGCTTGCG ATGCCACTAA TGAGGAAGCG
GTACAAAAAT TACGTTATCG CAAACGTCGC CCAGATAAAC CTTTAGCATT GATGGCACGA
GATATTGAGG TGATTTCCGA ATATTGTAGT ATTAGTGAGA TGGAACACAA ATTATTATCA
AGTGTAGCTG CTCCTATTGT GTTGTTATCT GCCAACGGTA GCAAACAGGT TGCTCCTAGT
GTTGCACCTG GACAAAATAC TTTGGGTTTT ATGCTACCAT ATACTCCATT GCATCATTTA
GCACTGCGTC GTTTGAATGT TCCCATGGTA TTAACAAGTG GCAATTTTTC TGATGAACCT
CAGTGTATTG ATAATGAAGA AACTCGGGAA AAACTATCAG GAATTGCTGA TTATTTTCTC
ATACATAATC GCCCTATTTT TAATCGGGTT GATGATTCTG TGGTACGAGT TATTAAAGAA
GTGCCTCAAG TATTACGTCG AGCTCGTGGT TATGCTCCTG CCCCAATTAA TTTACCTCCT
GGATTTGCTA ATATTTCTCC TATTTTGGCA ATGGGAAGTC AGTTAAAAAA TACTTTTTGT
TTATTGCGTG ATGGTCAAGC TATTTTATCT CAACATATTG GGGATTTAAA AAATAGTTTA
GCTGTCACGG CTTATCAAAA AACTTTGAAT CTTTTTTTGG AGTTATTGGA GGCTAAACCT
AGTAATATTG TTGTTGATAA ACACCCAGAA TATTTATCAA CAAAACTAGG AAAAGATTTG
GCAAATACTA ATAATTCAAA AATTATAGAA GTGCAGCATC ATCATAGTCA TATAGCAGCT
TGTATGGTTG AAAATGGATT AGATATTGAT TGTCAGCCTG TTTTAGGAAT TGCTCTAGAC
GGGTTGGGTT ATGGGGAAGA TGGAACTATT TGGGGAGGAG AATTTTTATT AGCAAATTAT
CACGGTTTTG AACGTTTAGG AACTTTTAAA CCTGTAGCAA TGATTGGAGG AGAACAGGCA
ATTTATCAAC CTTGGCGGAA TACTTATGCA CATTTAGTAG CTGCTTTTGG TGTAGATTTT
ATTAAGAATT ATGAATGTTT GGAATTATTT AGTTTTTTGC AAACAAAACC TCTAGCTTTG
CTAAATCAAA TGATAGAAAA AAAGATTAAT TCTCCCCTGG CTTCTTCTTG TGGACGGTTA
TTTGATGCGG TAGCTGCTGC GATTGGAATT TGCCAAGAAT CTTGTAGTTA TGAAGGCCAA
GCTGCTATCA GTTTGGAGAC TTTAGCAACA GAATATTTGT TAAATGATTC TGAAGAAATT
GAGAGTTATC AATTGGATCT GTTACAAATG GAAAATGTAA GTAAATTCCC TCTTACTTAT
ATAGTGCCAC AGCCAATGTG GCAATCTTTA CTGATAGATA CAAAACAAAG TGCCACTCCA
GCTCTGATGG CAGCTAAATT TCATCAAGGG TTAGCGAAGG CTATTTCTAA GATGGTAGCT
GAATTACATC AGAGTTGTGA GTTTAATCAG GTAGCTTTGA CTGGTGGAGT ATTTCAAAAT
CAATTGTTAC TTTCTCTAGT GAGCGATCGC TTAATTAAAA TGGGGTTAGA CGTATTGACT
CATCGTCAAG TTCCAGCTAA TGATGGTGGT TTATCTCTAG GTCAAGTAGC GATCGCTGCG
GCTAGACTGA GAATGTAA
|
|---|
| Protein sequence | MSKIAEQIRI YGTVQGVGFR PTVYRIAKTL GLCGEVSNDG QGVLIKVVGD RSTIDQLIEK
IHSERPPLAD IETITRQHLE NANFLDFIIT SSNNNSVRTK IAPDAATCSN CKHEILDPLS
RWYRYPFTNC THCGPRFSIT KKLPYDRKNT TMADFNFCPE CQEEYSDPLN RRFHAQPIAC
HVCGPKAWLE RADGKPVTAD MFSMLDDVDA LCTLIQRGMI VAVKGLGGFH LACDATNEEA
VQKLRYRKRR PDKPLALMAR DIEVISEYCS ISEMEHKLLS SVAAPIVLLS ANGSKQVAPS
VAPGQNTLGF MLPYTPLHHL ALRRLNVPMV LTSGNFSDEP QCIDNEETRE KLSGIADYFL
IHNRPIFNRV DDSVVRVIKE VPQVLRRARG YAPAPINLPP GFANISPILA MGSQLKNTFC
LLRDGQAILS QHIGDLKNSL AVTAYQKTLN LFLELLEAKP SNIVVDKHPE YLSTKLGKDL
ANTNNSKIIE VQHHHSHIAA CMVENGLDID CQPVLGIALD GLGYGEDGTI WGGEFLLANY
HGFERLGTFK PVAMIGGEQA IYQPWRNTYA HLVAAFGVDF IKNYECLELF SFLQTKPLAL
LNQMIEKKIN SPLASSCGRL FDAVAAAIGI CQESCSYEGQ AAISLETLAT EYLLNDSEEI
ESYQLDLLQM ENVSKFPLTY IVPQPMWQSL LIDTKQSATP ALMAAKFHQG LAKAISKMVA
ELHQSCEFNQ VALTGGVFQN QLLLSLVSDR LIKMGLDVLT HRQVPANDGG LSLGQVAIAA
ARLRM
|
|---|
| |